Hb_002121_070

Information

Type -
Description -
Location Contig2121: 117501-118603
Sequence    

Annotation

kegg
ID rcu:RCOM_0865870
description hypothetical protein
nr
ID XP_002519872.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O49668
description Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1
trembl
ID B9S1K7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865870 PE=4 SV=1
Gene Ontology
ID GO:0010207
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002121_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000362_100 0.0291803516 - - -
3 Hb_005714_120 0.0331188234 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_007632_140 0.0565932046 - - -
5 Hb_036731_010 0.0581435213 - - -
6 Hb_019135_010 0.0700402251 - - -
7 Hb_166210_010 0.0757960251 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005021_040 0.0824750719 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
9 Hb_043960_010 0.0872520449 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001514_140 0.0943254053 - - -
11 Hb_018746_010 0.1051857108 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
12 Hb_002876_100 0.113322271 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
13 Hb_002188_050 0.1198896727 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
14 Hb_002762_010 0.1256493609 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
15 Hb_006415_010 0.1302876257 - - -
16 Hb_106274_010 0.145840569 - - hypothetical protein VITISV_008825 [Vitis vinifera]
17 Hb_005337_010 0.1461978126 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
18 Hb_000367_150 0.1479438795 - - -
19 Hb_001699_020 0.1515105103 - - hypothetical protein L484_026849 [Morus notabilis]
20 Hb_000906_120 0.1565402664 - - hypothetical protein VITISV_006406 [Vitis vinifera]

Gene co-expression network

sample Hb_002121_070 Hb_002121_070 Hb_000362_100 Hb_000362_100 Hb_002121_070--Hb_000362_100 Hb_005714_120 Hb_005714_120 Hb_002121_070--Hb_005714_120 Hb_007632_140 Hb_007632_140 Hb_002121_070--Hb_007632_140 Hb_036731_010 Hb_036731_010 Hb_002121_070--Hb_036731_010 Hb_019135_010 Hb_019135_010 Hb_002121_070--Hb_019135_010 Hb_166210_010 Hb_166210_010 Hb_002121_070--Hb_166210_010 Hb_000362_100--Hb_007632_140 Hb_000362_100--Hb_019135_010 Hb_000362_100--Hb_005714_120 Hb_000362_100--Hb_036731_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010 Hb_005714_120--Hb_036731_010 Hb_005714_120--Hb_166210_010 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_005021_040 Hb_005021_040 Hb_005714_120--Hb_005021_040 Hb_007632_140--Hb_019135_010 Hb_007632_140--Hb_005714_120 Hb_106274_010 Hb_106274_010 Hb_007632_140--Hb_106274_010 Hb_007632_140--Hb_005021_040 Hb_036731_010--Hb_166210_010 Hb_036731_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_036731_010--Hb_018746_010 Hb_019135_010--Hb_106274_010 Hb_000367_150 Hb_000367_150 Hb_019135_010--Hb_000367_150 Hb_001231_020 Hb_001231_020 Hb_019135_010--Hb_001231_020 Hb_166210_010--Hb_001514_140 Hb_166210_010--Hb_018746_010 Hb_002233_050 Hb_002233_050 Hb_166210_010--Hb_002233_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.119099 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.114179 0.400206

CAGE analysis