Hb_000906_120

Information

Type -
Description -
Location Contig906: 175333-177355
Sequence    

Annotation

kegg
ID csv:101216835
description uncharacterized LOC101216835
nr
ID CAN67780.1
description hypothetical protein VITISV_006406 [Vitis vinifera]
swissprot
ID P92519
description Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1
trembl
ID A5BD83
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006406 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_006406

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_120 0.0 - - hypothetical protein VITISV_006406 [Vitis vinifera]
2 Hb_006415_010 0.0344391409 - - -
3 Hb_002188_050 0.0408378269 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
4 Hb_089299_010 0.0643518041 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005021_040 0.0820710582 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
6 Hb_188163_010 0.1098173945 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
7 Hb_142051_010 0.1378044528 - - -
8 Hb_010129_020 0.1438209643 - - cytochrome P450, putative [Ricinus communis]
9 Hb_005714_120 0.1505833497 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_004129_180 0.1520552188 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
11 Hb_002121_070 0.1565402664 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002809_090 0.1634900199 - - -
13 Hb_036731_010 0.1635793804 - - -
14 Hb_002876_100 0.1650587194 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
15 Hb_000362_100 0.169493625 - - -
16 Hb_004487_060 0.1738079395 - - cytochrome P450, putative [Ricinus communis]
17 Hb_166210_010 0.1751124895 - - conserved hypothetical protein [Ricinus communis]
18 Hb_029510_080 0.1757270276 - - -
19 Hb_007632_140 0.1787891108 - - -
20 Hb_003057_030 0.1809763913 - - hypothetical protein JCGZ_06668 [Jatropha curcas]

Gene co-expression network

sample Hb_000906_120 Hb_000906_120 Hb_006415_010 Hb_006415_010 Hb_000906_120--Hb_006415_010 Hb_002188_050 Hb_002188_050 Hb_000906_120--Hb_002188_050 Hb_089299_010 Hb_089299_010 Hb_000906_120--Hb_089299_010 Hb_005021_040 Hb_005021_040 Hb_000906_120--Hb_005021_040 Hb_188163_010 Hb_188163_010 Hb_000906_120--Hb_188163_010 Hb_142051_010 Hb_142051_010 Hb_000906_120--Hb_142051_010 Hb_006415_010--Hb_002188_050 Hb_006415_010--Hb_005021_040 Hb_006415_010--Hb_089299_010 Hb_005714_120 Hb_005714_120 Hb_006415_010--Hb_005714_120 Hb_002121_070 Hb_002121_070 Hb_006415_010--Hb_002121_070 Hb_002188_050--Hb_005021_040 Hb_002188_050--Hb_089299_010 Hb_002188_050--Hb_005714_120 Hb_002188_050--Hb_002121_070 Hb_089299_010--Hb_142051_010 Hb_002809_090 Hb_002809_090 Hb_089299_010--Hb_002809_090 Hb_029510_080 Hb_029510_080 Hb_089299_010--Hb_029510_080 Hb_005021_040--Hb_002121_070 Hb_005021_040--Hb_005714_120 Hb_000362_100 Hb_000362_100 Hb_005021_040--Hb_000362_100 Hb_004129_180 Hb_004129_180 Hb_188163_010--Hb_004129_180 Hb_010129_020 Hb_010129_020 Hb_188163_010--Hb_010129_020 Hb_097933_010 Hb_097933_010 Hb_188163_010--Hb_097933_010 Hb_188163_010--Hb_002188_050 Hb_188163_010--Hb_006415_010 Hb_142051_010--Hb_002809_090 Hb_142051_010--Hb_029510_080 Hb_003057_030 Hb_003057_030 Hb_142051_010--Hb_003057_030 Hb_161728_010 Hb_161728_010 Hb_142051_010--Hb_161728_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0177929 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0516917 0.0871585

CAGE analysis