Hb_188163_010

Information

Type -
Description -
Location Contig188163: 5576-6829
Sequence    

Annotation

kegg
ID cit:102613465
description probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like
nr
ID KDO40865.1
description hypothetical protein CISIN_1g048732mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DH32
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048732mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188163_010 0.0 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
2 Hb_004129_180 0.0652613802 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
3 Hb_010129_020 0.0896281272 - - cytochrome P450, putative [Ricinus communis]
4 Hb_097933_010 0.1027684486 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
5 Hb_000906_120 0.1098173945 - - hypothetical protein VITISV_006406 [Vitis vinifera]
6 Hb_002188_050 0.1264410756 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
7 Hb_006415_010 0.1421495269 - - -
8 Hb_089299_010 0.1480198637 - - conserved hypothetical protein [Ricinus communis]
9 Hb_108160_010 0.1509688167 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_121689_030 0.1509890666 - - hypothetical protein, partial [Staphylococcus aureus]
11 Hb_000173_090 0.1510072037 - - -
12 Hb_008145_020 0.1510231299 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
13 Hb_118909_010 0.1510604137 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
14 Hb_186634_010 0.1511705064 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
15 Hb_000208_070 0.1511863168 - - -
16 Hb_093458_030 0.1515597964 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
17 Hb_028665_010 0.151560552 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
18 Hb_032683_010 0.1516640652 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_001234_090 0.151700212 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
20 Hb_029695_040 0.151794181 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_188163_010 Hb_188163_010 Hb_004129_180 Hb_004129_180 Hb_188163_010--Hb_004129_180 Hb_010129_020 Hb_010129_020 Hb_188163_010--Hb_010129_020 Hb_097933_010 Hb_097933_010 Hb_188163_010--Hb_097933_010 Hb_000906_120 Hb_000906_120 Hb_188163_010--Hb_000906_120 Hb_002188_050 Hb_002188_050 Hb_188163_010--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_188163_010--Hb_006415_010 Hb_004129_180--Hb_010129_020 Hb_067634_010 Hb_067634_010 Hb_004129_180--Hb_067634_010 Hb_000312_030 Hb_000312_030 Hb_004129_180--Hb_000312_030 Hb_115868_030 Hb_115868_030 Hb_004129_180--Hb_115868_030 Hb_153924_010 Hb_153924_010 Hb_004129_180--Hb_153924_010 Hb_010129_020--Hb_097933_010 Hb_010129_020--Hb_000906_120 Hb_001880_020 Hb_001880_020 Hb_010129_020--Hb_001880_020 Hb_010129_020--Hb_002188_050 Hb_000575_050 Hb_000575_050 Hb_097933_010--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_097933_010--Hb_021888_160 Hb_006907_110 Hb_006907_110 Hb_097933_010--Hb_006907_110 Hb_000501_080 Hb_000501_080 Hb_097933_010--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_097933_010--Hb_174662_020 Hb_000906_120--Hb_006415_010 Hb_000906_120--Hb_002188_050 Hb_089299_010 Hb_089299_010 Hb_000906_120--Hb_089299_010 Hb_005021_040 Hb_005021_040 Hb_000906_120--Hb_005021_040 Hb_142051_010 Hb_142051_010 Hb_000906_120--Hb_142051_010 Hb_002188_050--Hb_006415_010 Hb_002188_050--Hb_005021_040 Hb_002188_050--Hb_089299_010 Hb_005714_120 Hb_005714_120 Hb_002188_050--Hb_005714_120 Hb_002121_070 Hb_002121_070 Hb_002188_050--Hb_002121_070 Hb_006415_010--Hb_005021_040 Hb_006415_010--Hb_089299_010 Hb_006415_010--Hb_005714_120 Hb_006415_010--Hb_002121_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0453196 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.360667 0.60507

CAGE analysis