Hb_174662_020

Information

Type -
Description -
Location Contig174662: 3413-3946
Sequence    

Annotation

kegg
ID bvg:104888075
description uncharacterized LOC104888075
nr
ID XP_010671209.1
description PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCK1
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174662_020 0.0 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
2 Hb_000501_080 0.0003312275 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
3 Hb_007810_080 0.0049907679 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
4 Hb_021888_160 0.0080756366 - - -
5 Hb_000575_050 0.010428626 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
6 Hb_006907_110 0.0113285624 - - -
7 Hb_000574_490 0.019158168 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
8 Hb_003780_010 0.0248470924 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002110_220 0.0286581952 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007622_010 0.0324410874 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
11 Hb_042083_020 0.0333141175 - - -
12 Hb_000190_130 0.0413938844 - - cysteine protease inhibitor [Populus tremula]
13 Hb_002387_030 0.0433522983 - - conserved hypothetical protein [Ricinus communis]
14 Hb_093039_010 0.0450563664 - - JHL22C18.10 [Jatropha curcas]
15 Hb_003940_060 0.0604125368 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
16 Hb_029695_040 0.0633733851 - - Pectate lyase precursor, putative [Ricinus communis]
17 Hb_002570_050 0.0634049319 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
18 Hb_001234_090 0.0642950417 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
19 Hb_186634_010 0.0711810032 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
20 Hb_118909_010 0.0735132664 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]

Gene co-expression network

sample Hb_174662_020 Hb_174662_020 Hb_000501_080 Hb_000501_080 Hb_174662_020--Hb_000501_080 Hb_007810_080 Hb_007810_080 Hb_174662_020--Hb_007810_080 Hb_021888_160 Hb_021888_160 Hb_174662_020--Hb_021888_160 Hb_000575_050 Hb_000575_050 Hb_174662_020--Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_174662_020--Hb_006907_110 Hb_000574_490 Hb_000574_490 Hb_174662_020--Hb_000574_490 Hb_000501_080--Hb_007810_080 Hb_000501_080--Hb_021888_160 Hb_000501_080--Hb_000575_050 Hb_000501_080--Hb_006907_110 Hb_000501_080--Hb_000574_490 Hb_007810_080--Hb_021888_160 Hb_007810_080--Hb_000575_050 Hb_007810_080--Hb_006907_110 Hb_002110_220 Hb_002110_220 Hb_007810_080--Hb_002110_220 Hb_021888_160--Hb_000575_050 Hb_021888_160--Hb_006907_110 Hb_021888_160--Hb_000574_490 Hb_000575_050--Hb_006907_110 Hb_000575_050--Hb_000574_490 Hb_003780_010 Hb_003780_010 Hb_000575_050--Hb_003780_010 Hb_006907_110--Hb_000574_490 Hb_006907_110--Hb_003780_010 Hb_000574_490--Hb_003780_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.156838 0.179786

CAGE analysis