Hb_002110_220

Information

Type -
Description -
Location Contig2110: 173119-179211
Sequence    

Annotation

kegg
ID rcu:RCOM_1038050
description hypothetical protein
nr
ID XP_002513992.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJS3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1038050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007622_010 0.0037841447 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
3 Hb_042083_020 0.0046575059 - - -
4 Hb_002387_030 0.0147006322 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007810_080 0.0236686217 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
6 Hb_174662_020 0.0286581952 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
7 Hb_000501_080 0.0289893258 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
8 Hb_003940_060 0.031774145 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
9 Hb_029695_040 0.0347379307 - - Pectate lyase precursor, putative [Ricinus communis]
10 Hb_001234_090 0.0356605404 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
11 Hb_021888_160 0.0367308434 - - -
12 Hb_000575_050 0.0390827176 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
13 Hb_006907_110 0.0399821983 - - -
14 Hb_186634_010 0.042554207 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
15 Hb_118909_010 0.0448893151 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
16 Hb_000574_490 0.0478071614 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
17 Hb_003780_010 0.0534919516 - - conserved hypothetical protein [Ricinus communis]
18 Hb_108160_010 0.0540198907 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_121689_030 0.0549203098 - - hypothetical protein, partial [Staphylococcus aureus]
20 Hb_000173_090 0.0555788119 - - -

Gene co-expression network

sample Hb_002110_220 Hb_002110_220 Hb_007622_010 Hb_007622_010 Hb_002110_220--Hb_007622_010 Hb_042083_020 Hb_042083_020 Hb_002110_220--Hb_042083_020 Hb_002387_030 Hb_002387_030 Hb_002110_220--Hb_002387_030 Hb_007810_080 Hb_007810_080 Hb_002110_220--Hb_007810_080 Hb_174662_020 Hb_174662_020 Hb_002110_220--Hb_174662_020 Hb_000501_080 Hb_000501_080 Hb_002110_220--Hb_000501_080 Hb_007622_010--Hb_042083_020 Hb_007622_010--Hb_002387_030 Hb_007622_010--Hb_007810_080 Hb_003940_060 Hb_003940_060 Hb_007622_010--Hb_003940_060 Hb_029695_040 Hb_029695_040 Hb_007622_010--Hb_029695_040 Hb_042083_020--Hb_002387_030 Hb_042083_020--Hb_003940_060 Hb_042083_020--Hb_007810_080 Hb_042083_020--Hb_029695_040 Hb_002387_030--Hb_003940_060 Hb_002387_030--Hb_029695_040 Hb_001234_090 Hb_001234_090 Hb_002387_030--Hb_001234_090 Hb_007810_080--Hb_174662_020 Hb_007810_080--Hb_000501_080 Hb_021888_160 Hb_021888_160 Hb_007810_080--Hb_021888_160 Hb_000575_050 Hb_000575_050 Hb_007810_080--Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_007810_080--Hb_006907_110 Hb_174662_020--Hb_000501_080 Hb_174662_020--Hb_021888_160 Hb_174662_020--Hb_000575_050 Hb_174662_020--Hb_006907_110 Hb_000574_490 Hb_000574_490 Hb_174662_020--Hb_000574_490 Hb_000501_080--Hb_021888_160 Hb_000501_080--Hb_000575_050 Hb_000501_080--Hb_006907_110 Hb_000501_080--Hb_000574_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0375652 0.0493208

CAGE analysis