Hb_002387_030

Information

Type -
Description -
Location Contig2387: 33566-33772
Sequence    

Annotation

kegg
ID rcu:RCOM_0560050
description hypothetical protein
nr
ID XP_002520271.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2Q2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0560050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_042083_020 0.0100433757 - - -
3 Hb_007622_010 0.0109167076 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
4 Hb_002110_220 0.0147006322 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003940_060 0.0170764444 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
6 Hb_029695_040 0.020041066 - - Pectate lyase precursor, putative [Ricinus communis]
7 Hb_001234_090 0.0209639559 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
8 Hb_186634_010 0.0278600181 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
9 Hb_118909_010 0.0301960594 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
10 Hb_007810_080 0.0383644726 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
11 Hb_108160_010 0.0393308814 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_121689_030 0.0402317713 - - hypothetical protein, partial [Staphylococcus aureus]
13 Hb_000173_090 0.0408906236 - - -
14 Hb_008145_020 0.0413993216 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
15 Hb_174662_020 0.0433522983 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
16 Hb_000501_080 0.0436833039 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
17 Hb_000208_070 0.045046223 - - -
18 Hb_093458_030 0.0501621287 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
19 Hb_028665_010 0.0501705748 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
20 Hb_032683_010 0.0512829206 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_002387_030 Hb_002387_030 Hb_042083_020 Hb_042083_020 Hb_002387_030--Hb_042083_020 Hb_007622_010 Hb_007622_010 Hb_002387_030--Hb_007622_010 Hb_002110_220 Hb_002110_220 Hb_002387_030--Hb_002110_220 Hb_003940_060 Hb_003940_060 Hb_002387_030--Hb_003940_060 Hb_029695_040 Hb_029695_040 Hb_002387_030--Hb_029695_040 Hb_001234_090 Hb_001234_090 Hb_002387_030--Hb_001234_090 Hb_042083_020--Hb_007622_010 Hb_042083_020--Hb_002110_220 Hb_042083_020--Hb_003940_060 Hb_007810_080 Hb_007810_080 Hb_042083_020--Hb_007810_080 Hb_042083_020--Hb_029695_040 Hb_007622_010--Hb_002110_220 Hb_007622_010--Hb_007810_080 Hb_007622_010--Hb_003940_060 Hb_007622_010--Hb_029695_040 Hb_002110_220--Hb_007810_080 Hb_174662_020 Hb_174662_020 Hb_002110_220--Hb_174662_020 Hb_000501_080 Hb_000501_080 Hb_002110_220--Hb_000501_080 Hb_003940_060--Hb_029695_040 Hb_003940_060--Hb_001234_090 Hb_186634_010 Hb_186634_010 Hb_003940_060--Hb_186634_010 Hb_118909_010 Hb_118909_010 Hb_003940_060--Hb_118909_010 Hb_108160_010 Hb_108160_010 Hb_003940_060--Hb_108160_010 Hb_029695_040--Hb_001234_090 Hb_029695_040--Hb_186634_010 Hb_029695_040--Hb_118909_010 Hb_029695_040--Hb_108160_010 Hb_001234_090--Hb_186634_010 Hb_001234_090--Hb_118909_010 Hb_001234_090--Hb_108160_010 Hb_121689_030 Hb_121689_030 Hb_001234_090--Hb_121689_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.30481 4.6539

CAGE analysis