Hb_007810_080

Information

Type -
Description -
Location Contig7810: 54404-54595
Sequence    

Annotation

kegg
ID cmo:103491654
description uncharacterized LOC103491654
nr
ID XP_008449924.1
description PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A067EEG2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028119mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein POPTR_0011s01952g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_080 0.0 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
2 Hb_174662_020 0.0049907679 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
3 Hb_000501_080 0.0053219924 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
4 Hb_021888_160 0.0130662204 - - -
5 Hb_000575_050 0.0154191136 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
6 Hb_006907_110 0.016319008 - - -
7 Hb_002110_220 0.0236686217 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000574_490 0.0241481305 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
9 Hb_007622_010 0.0274518894 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
10 Hb_042083_020 0.0283250135 - - -
11 Hb_003780_010 0.0298365709 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002387_030 0.0383644726 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000190_130 0.046381321 - - cysteine protease inhibitor [Populus tremula]
14 Hb_093039_010 0.0500432236 - - JHL22C18.10 [Jatropha curcas]
15 Hb_003940_060 0.0554277283 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
16 Hb_029695_040 0.05838921 - - Pectate lyase precursor, putative [Ricinus communis]
17 Hb_001234_090 0.0593110705 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
18 Hb_186634_010 0.0661986563 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
19 Hb_002570_050 0.0683881916 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
20 Hb_118909_010 0.0685315104 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]

Gene co-expression network

sample Hb_007810_080 Hb_007810_080 Hb_174662_020 Hb_174662_020 Hb_007810_080--Hb_174662_020 Hb_000501_080 Hb_000501_080 Hb_007810_080--Hb_000501_080 Hb_021888_160 Hb_021888_160 Hb_007810_080--Hb_021888_160 Hb_000575_050 Hb_000575_050 Hb_007810_080--Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_007810_080--Hb_006907_110 Hb_002110_220 Hb_002110_220 Hb_007810_080--Hb_002110_220 Hb_174662_020--Hb_000501_080 Hb_174662_020--Hb_021888_160 Hb_174662_020--Hb_000575_050 Hb_174662_020--Hb_006907_110 Hb_000574_490 Hb_000574_490 Hb_174662_020--Hb_000574_490 Hb_000501_080--Hb_021888_160 Hb_000501_080--Hb_000575_050 Hb_000501_080--Hb_006907_110 Hb_000501_080--Hb_000574_490 Hb_021888_160--Hb_000575_050 Hb_021888_160--Hb_006907_110 Hb_021888_160--Hb_000574_490 Hb_000575_050--Hb_006907_110 Hb_000575_050--Hb_000574_490 Hb_003780_010 Hb_003780_010 Hb_000575_050--Hb_003780_010 Hb_006907_110--Hb_000574_490 Hb_006907_110--Hb_003780_010 Hb_007622_010 Hb_007622_010 Hb_002110_220--Hb_007622_010 Hb_042083_020 Hb_042083_020 Hb_002110_220--Hb_042083_020 Hb_002387_030 Hb_002387_030 Hb_002110_220--Hb_002387_030 Hb_002110_220--Hb_174662_020 Hb_002110_220--Hb_000501_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.32135 1.55081

CAGE analysis