Hb_003780_010

Information

Type -
Description -
Location Contig3780: 32512-35983
Sequence    

Annotation

kegg
ID rcu:RCOM_1318880
description hypothetical protein
nr
ID XP_002529273.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003780_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000574_490 0.0056898652 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
3 Hb_006907_110 0.013519853 - - -
4 Hb_000575_050 0.0144197655 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
5 Hb_000190_130 0.0165526957 - - cysteine protease inhibitor [Populus tremula]
6 Hb_021888_160 0.0167726264 - - -
7 Hb_093039_010 0.0202171212 - - JHL22C18.10 [Jatropha curcas]
8 Hb_000501_080 0.0245159351 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
9 Hb_174662_020 0.0248470924 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
10 Hb_007810_080 0.0298365709 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
11 Hb_002570_050 0.038578905 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
12 Hb_002110_220 0.0534919516 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007622_010 0.0572720027 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
14 Hb_042083_020 0.0581443409 - - -
15 Hb_000052_030 0.0618560094 - - -
16 Hb_003927_030 0.063193617 - - unnamed protein product [Coffea canephora]
17 Hb_002387_030 0.0681735883 - - conserved hypothetical protein [Ricinus communis]
18 Hb_169597_010 0.0683939437 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
19 Hb_003940_060 0.0852144688 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
20 Hb_029695_040 0.0881714154 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003780_010 Hb_003780_010 Hb_000574_490 Hb_000574_490 Hb_003780_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_003780_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_003780_010--Hb_000575_050 Hb_000190_130 Hb_000190_130 Hb_003780_010--Hb_000190_130 Hb_021888_160 Hb_021888_160 Hb_003780_010--Hb_021888_160 Hb_093039_010 Hb_093039_010 Hb_003780_010--Hb_093039_010 Hb_000574_490--Hb_006907_110 Hb_000574_490--Hb_000575_050 Hb_000574_490--Hb_021888_160 Hb_000501_080 Hb_000501_080 Hb_000574_490--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_000574_490--Hb_174662_020 Hb_006907_110--Hb_000575_050 Hb_006907_110--Hb_021888_160 Hb_006907_110--Hb_000501_080 Hb_006907_110--Hb_174662_020 Hb_000575_050--Hb_021888_160 Hb_000575_050--Hb_000501_080 Hb_000575_050--Hb_174662_020 Hb_000190_130--Hb_093039_010 Hb_002570_050 Hb_002570_050 Hb_000190_130--Hb_002570_050 Hb_000190_130--Hb_000574_490 Hb_000190_130--Hb_006907_110 Hb_000190_130--Hb_000575_050 Hb_021888_160--Hb_000501_080 Hb_021888_160--Hb_174662_020 Hb_007810_080 Hb_007810_080 Hb_021888_160--Hb_007810_080 Hb_093039_010--Hb_002570_050 Hb_093039_010--Hb_000574_490 Hb_093039_010--Hb_006907_110 Hb_093039_010--Hb_000575_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0778685 0.0793954

CAGE analysis