Hb_002570_050

Information

Type -
Description -
Location Contig2570: 47783-48129
Sequence    

Annotation

kegg
ID bvg:104897677
description uncharacterized LOC104897677
nr
ID XP_010682916.1
description PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCI9
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002570_050 0.0 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
2 Hb_093039_010 0.0183667618 - - JHL22C18.10 [Jatropha curcas]
3 Hb_000190_130 0.0220310963 - - cysteine protease inhibitor [Populus tremula]
4 Hb_000052_030 0.0232965575 - - -
5 Hb_003927_030 0.0246357344 - - unnamed protein product [Coffea canephora]
6 Hb_169597_010 0.0298426326 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
7 Hb_003780_010 0.038578905 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000574_490 0.0442654008 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
9 Hb_006907_110 0.0520893398 - - -
10 Hb_000575_050 0.0529884522 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
11 Hb_000946_020 0.0548865149 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
12 Hb_021888_160 0.0553391193 - - -
13 Hb_000501_080 0.0630741638 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
14 Hb_174662_020 0.0634049319 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
15 Hb_007810_080 0.0683881916 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
16 Hb_006261_010 0.0897400094 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
17 Hb_002110_220 0.0920049852 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007622_010 0.0957774689 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
19 Hb_007757_090 0.0961325209 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
20 Hb_042083_020 0.0966480056 - - -

Gene co-expression network

sample Hb_002570_050 Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_002570_050--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_002570_050--Hb_000190_130 Hb_000052_030 Hb_000052_030 Hb_002570_050--Hb_000052_030 Hb_003927_030 Hb_003927_030 Hb_002570_050--Hb_003927_030 Hb_169597_010 Hb_169597_010 Hb_002570_050--Hb_169597_010 Hb_003780_010 Hb_003780_010 Hb_002570_050--Hb_003780_010 Hb_093039_010--Hb_000190_130 Hb_093039_010--Hb_003780_010 Hb_000574_490 Hb_000574_490 Hb_093039_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_093039_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_093039_010--Hb_000575_050 Hb_000190_130--Hb_003780_010 Hb_000190_130--Hb_000574_490 Hb_000190_130--Hb_006907_110 Hb_000190_130--Hb_000575_050 Hb_000052_030--Hb_003927_030 Hb_000052_030--Hb_169597_010 Hb_000946_020 Hb_000946_020 Hb_000052_030--Hb_000946_020 Hb_000052_030--Hb_093039_010 Hb_000052_030--Hb_000190_130 Hb_003927_030--Hb_169597_010 Hb_003927_030--Hb_000946_020 Hb_003927_030--Hb_093039_010 Hb_003927_030--Hb_000190_130 Hb_169597_010--Hb_000946_020 Hb_169597_010--Hb_093039_010 Hb_169597_010--Hb_000190_130 Hb_003780_010--Hb_000574_490 Hb_003780_010--Hb_006907_110 Hb_003780_010--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_003780_010--Hb_021888_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.505747 0.4299

CAGE analysis