Hb_093039_010

Information

Type -
Description -
Location Contig93039: 1969-2673
Sequence    

Annotation

kegg
ID mtr:MTR_6g026690
description hypothetical protein
nr
ID BAJ53217.1
description JHL22C18.10 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093039_010 0.0 - - JHL22C18.10 [Jatropha curcas]
2 Hb_000190_130 0.0036648509 - - cysteine protease inhibitor [Populus tremula]
3 Hb_002570_050 0.0183667618 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
4 Hb_003780_010 0.0202171212 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_490 0.0259059536 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
6 Hb_006907_110 0.0337337785 - - -
7 Hb_000575_050 0.0346333873 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
8 Hb_021888_160 0.0369854006 - - -
9 Hb_000052_030 0.041657052 - - -
10 Hb_003927_030 0.0429956532 - - unnamed protein product [Coffea canephora]
11 Hb_000501_080 0.0447253707 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
12 Hb_174662_020 0.0450563664 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
13 Hb_169597_010 0.0482000883 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
14 Hb_007810_080 0.0500432236 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
15 Hb_000946_020 0.073227069 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
16 Hb_002110_220 0.0736813836 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007622_010 0.0774579444 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
18 Hb_042083_020 0.0783294481 - - -
19 Hb_002387_030 0.0883483132 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003940_060 0.1053682012 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]

Gene co-expression network

sample Hb_093039_010 Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_093039_010--Hb_000190_130 Hb_002570_050 Hb_002570_050 Hb_093039_010--Hb_002570_050 Hb_003780_010 Hb_003780_010 Hb_093039_010--Hb_003780_010 Hb_000574_490 Hb_000574_490 Hb_093039_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_093039_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_093039_010--Hb_000575_050 Hb_000190_130--Hb_003780_010 Hb_000190_130--Hb_002570_050 Hb_000190_130--Hb_000574_490 Hb_000190_130--Hb_006907_110 Hb_000190_130--Hb_000575_050 Hb_000052_030 Hb_000052_030 Hb_002570_050--Hb_000052_030 Hb_003927_030 Hb_003927_030 Hb_002570_050--Hb_003927_030 Hb_169597_010 Hb_169597_010 Hb_002570_050--Hb_169597_010 Hb_002570_050--Hb_003780_010 Hb_003780_010--Hb_000574_490 Hb_003780_010--Hb_006907_110 Hb_003780_010--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_003780_010--Hb_021888_160 Hb_000574_490--Hb_006907_110 Hb_000574_490--Hb_000575_050 Hb_000574_490--Hb_021888_160 Hb_000501_080 Hb_000501_080 Hb_000574_490--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_000574_490--Hb_174662_020 Hb_006907_110--Hb_000575_050 Hb_006907_110--Hb_021888_160 Hb_006907_110--Hb_000501_080 Hb_006907_110--Hb_174662_020 Hb_000575_050--Hb_021888_160 Hb_000575_050--Hb_000501_080 Hb_000575_050--Hb_174662_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.537934 0.498656

CAGE analysis