Hb_000190_130

Information

Type -
Description -
Location Contig190: 189821-190287
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19140g
description POPTRDRAFT_711772; cysteine proteinase inhibitor
nr
ID CAH57573.1
description cysteine protease inhibitor [Populus tremula]
swissprot
ID Q8H0X6
description Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2
trembl
ID Q5ZFT8
description Cysteine protease inhibitor OS=Populus tremula GN=ci1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18917: 191036-191373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_130 0.0 - - cysteine protease inhibitor [Populus tremula]
2 Hb_093039_010 0.0036648509 - - JHL22C18.10 [Jatropha curcas]
3 Hb_003780_010 0.0165526957 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002570_050 0.0220310963 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
5 Hb_000574_490 0.0222418349 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
6 Hb_006907_110 0.0300702162 - - -
7 Hb_000575_050 0.030969899 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
8 Hb_021888_160 0.0333221151 - - -
9 Hb_000501_080 0.0410628525 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
10 Hb_174662_020 0.0413938844 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
11 Hb_000052_030 0.0453194829 - - -
12 Hb_007810_080 0.046381321 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
13 Hb_003927_030 0.0466579319 - - unnamed protein product [Coffea canephora]
14 Hb_169597_010 0.0518617303 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
15 Hb_002110_220 0.0700230933 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007622_010 0.0738003646 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
17 Hb_042083_020 0.0746720375 - - -
18 Hb_000946_020 0.0768846451 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
19 Hb_002387_030 0.0846929899 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003940_060 0.1017170281 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]

Gene co-expression network

sample Hb_000190_130 Hb_000190_130 Hb_093039_010 Hb_093039_010 Hb_000190_130--Hb_093039_010 Hb_003780_010 Hb_003780_010 Hb_000190_130--Hb_003780_010 Hb_002570_050 Hb_002570_050 Hb_000190_130--Hb_002570_050 Hb_000574_490 Hb_000574_490 Hb_000190_130--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_000190_130--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_000190_130--Hb_000575_050 Hb_093039_010--Hb_002570_050 Hb_093039_010--Hb_003780_010 Hb_093039_010--Hb_000574_490 Hb_093039_010--Hb_006907_110 Hb_093039_010--Hb_000575_050 Hb_003780_010--Hb_000574_490 Hb_003780_010--Hb_006907_110 Hb_003780_010--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_003780_010--Hb_021888_160 Hb_000052_030 Hb_000052_030 Hb_002570_050--Hb_000052_030 Hb_003927_030 Hb_003927_030 Hb_002570_050--Hb_003927_030 Hb_169597_010 Hb_169597_010 Hb_002570_050--Hb_169597_010 Hb_002570_050--Hb_003780_010 Hb_000574_490--Hb_006907_110 Hb_000574_490--Hb_000575_050 Hb_000574_490--Hb_021888_160 Hb_000501_080 Hb_000501_080 Hb_000574_490--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_000574_490--Hb_174662_020 Hb_006907_110--Hb_000575_050 Hb_006907_110--Hb_021888_160 Hb_006907_110--Hb_000501_080 Hb_006907_110--Hb_174662_020 Hb_000575_050--Hb_021888_160 Hb_000575_050--Hb_000501_080 Hb_000575_050--Hb_174662_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.361853 0.341275

CAGE analysis