Hb_000575_050

Information

Type -
Description -
Location Contig575: 90179-91165
Sequence    

Annotation

kegg
ID egr:104451191
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID KDO56172.1
description hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
swissprot
ID P21978
description Surface membrane glycoprotein GP46/M-2 OS=Leishmania amazonensis PE=1 SV=1
trembl
ID A0A067EYA3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0468601mg PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_050 0.0 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
2 Hb_006907_110 0.0008999734 - - -
3 Hb_021888_160 0.0023530586 - - -
4 Hb_000574_490 0.0087301489 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
5 Hb_000501_080 0.0100974107 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
6 Hb_174662_020 0.010428626 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
7 Hb_003780_010 0.0144197655 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007810_080 0.0154191136 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
9 Hb_000190_130 0.030969899 - - cysteine protease inhibitor [Populus tremula]
10 Hb_093039_010 0.0346333873 - - JHL22C18.10 [Jatropha curcas]
11 Hb_002110_220 0.0390827176 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007622_010 0.0428646135 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
13 Hb_042083_020 0.0437373985 - - -
14 Hb_002570_050 0.0529884522 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
15 Hb_002387_030 0.0537723486 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003940_060 0.0708253372 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
17 Hb_029695_040 0.0737846988 - - Pectate lyase precursor, putative [Ricinus communis]
18 Hb_001234_090 0.0747058787 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
19 Hb_000052_030 0.0762521654 - - -
20 Hb_003927_030 0.0775888367 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000575_050 Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_000575_050--Hb_006907_110 Hb_021888_160 Hb_021888_160 Hb_000575_050--Hb_021888_160 Hb_000574_490 Hb_000574_490 Hb_000575_050--Hb_000574_490 Hb_000501_080 Hb_000501_080 Hb_000575_050--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_000575_050--Hb_174662_020 Hb_003780_010 Hb_003780_010 Hb_000575_050--Hb_003780_010 Hb_006907_110--Hb_021888_160 Hb_006907_110--Hb_000574_490 Hb_006907_110--Hb_000501_080 Hb_006907_110--Hb_174662_020 Hb_006907_110--Hb_003780_010 Hb_021888_160--Hb_000501_080 Hb_021888_160--Hb_174662_020 Hb_021888_160--Hb_000574_490 Hb_007810_080 Hb_007810_080 Hb_021888_160--Hb_007810_080 Hb_000574_490--Hb_003780_010 Hb_000574_490--Hb_000501_080 Hb_000574_490--Hb_174662_020 Hb_000501_080--Hb_174662_020 Hb_000501_080--Hb_007810_080 Hb_174662_020--Hb_007810_080 Hb_000190_130 Hb_000190_130 Hb_003780_010--Hb_000190_130 Hb_003780_010--Hb_021888_160 Hb_093039_010 Hb_093039_010 Hb_003780_010--Hb_093039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.204383 0.223041

CAGE analysis