Hb_000501_080

Information

Type -
Description -
Location Contig501: 67403-68083
Sequence    

Annotation

kegg
ID mtr:MTR_116s0043
description Cysteine-rich receptor-like protein kinase
nr
ID EEE66267.1
description hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID B9FQM5
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_22457 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000501_080 0.0 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
2 Hb_174662_020 0.0003312275 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
3 Hb_007810_080 0.0053219924 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
4 Hb_021888_160 0.0077444163 - - -
5 Hb_000575_050 0.0100974107 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
6 Hb_006907_110 0.0109973493 - - -
7 Hb_000574_490 0.0188269821 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
8 Hb_003780_010 0.0245159351 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002110_220 0.0289893258 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007622_010 0.0327721907 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
11 Hb_042083_020 0.033645214 - - -
12 Hb_000190_130 0.0410628525 - - cysteine protease inhibitor [Populus tremula]
13 Hb_002387_030 0.0436833039 - - conserved hypothetical protein [Ricinus communis]
14 Hb_093039_010 0.0447253707 - - JHL22C18.10 [Jatropha curcas]
15 Hb_003940_060 0.0607433318 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
16 Hb_002570_050 0.0630741638 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
17 Hb_029695_040 0.0637041362 - - Pectate lyase precursor, putative [Ricinus communis]
18 Hb_001234_090 0.0646257787 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
19 Hb_186634_010 0.0715116282 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
20 Hb_118909_010 0.0738438509 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]

Gene co-expression network

sample Hb_000501_080 Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_000501_080--Hb_174662_020 Hb_007810_080 Hb_007810_080 Hb_000501_080--Hb_007810_080 Hb_021888_160 Hb_021888_160 Hb_000501_080--Hb_021888_160 Hb_000575_050 Hb_000575_050 Hb_000501_080--Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_000501_080--Hb_006907_110 Hb_000574_490 Hb_000574_490 Hb_000501_080--Hb_000574_490 Hb_174662_020--Hb_007810_080 Hb_174662_020--Hb_021888_160 Hb_174662_020--Hb_000575_050 Hb_174662_020--Hb_006907_110 Hb_174662_020--Hb_000574_490 Hb_007810_080--Hb_021888_160 Hb_007810_080--Hb_000575_050 Hb_007810_080--Hb_006907_110 Hb_002110_220 Hb_002110_220 Hb_007810_080--Hb_002110_220 Hb_021888_160--Hb_000575_050 Hb_021888_160--Hb_006907_110 Hb_021888_160--Hb_000574_490 Hb_000575_050--Hb_006907_110 Hb_000575_050--Hb_000574_490 Hb_003780_010 Hb_003780_010 Hb_000575_050--Hb_003780_010 Hb_006907_110--Hb_000574_490 Hb_006907_110--Hb_003780_010 Hb_000574_490--Hb_003780_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.158311 0.181191

CAGE analysis