Hb_000574_490

Information

Type -
Description -
Location Contig574: 423868-426707
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02490g
description POPTRDRAFT_667207; U3 small nucleolar RNA-associated protein 11
nr
ID XP_012073156.1
description PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
swissprot
ID Q8S1Z1
description Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2
trembl
ID A0A067KLE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06122 PE=4 SV=1
Gene Ontology
ID GO:0044424
description probable u3 small nucleolar rna-associated protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_490 0.0 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
2 Hb_003780_010 0.0056898652 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006907_110 0.0078301969 - - -
4 Hb_000575_050 0.0087301489 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
5 Hb_021888_160 0.0110831283 - - -
6 Hb_000501_080 0.0188269821 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
7 Hb_174662_020 0.019158168 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
8 Hb_000190_130 0.0222418349 - - cysteine protease inhibitor [Populus tremula]
9 Hb_007810_080 0.0241481305 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
10 Hb_093039_010 0.0259059536 - - JHL22C18.10 [Jatropha curcas]
11 Hb_002570_050 0.0442654008 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
12 Hb_002110_220 0.0478071614 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007622_010 0.0515880049 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
14 Hb_042083_020 0.0524605343 - - -
15 Hb_002387_030 0.0624922021 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000052_030 0.0675376164 - - -
17 Hb_003927_030 0.0688748771 - - unnamed protein product [Coffea canephora]
18 Hb_169597_010 0.0740737864 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
19 Hb_003940_060 0.0795381473 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
20 Hb_029695_040 0.0824960962 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000574_490 Hb_000574_490 Hb_003780_010 Hb_003780_010 Hb_000574_490--Hb_003780_010 Hb_006907_110 Hb_006907_110 Hb_000574_490--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_000574_490--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_000574_490--Hb_021888_160 Hb_000501_080 Hb_000501_080 Hb_000574_490--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_000574_490--Hb_174662_020 Hb_003780_010--Hb_006907_110 Hb_003780_010--Hb_000575_050 Hb_000190_130 Hb_000190_130 Hb_003780_010--Hb_000190_130 Hb_003780_010--Hb_021888_160 Hb_093039_010 Hb_093039_010 Hb_003780_010--Hb_093039_010 Hb_006907_110--Hb_000575_050 Hb_006907_110--Hb_021888_160 Hb_006907_110--Hb_000501_080 Hb_006907_110--Hb_174662_020 Hb_000575_050--Hb_021888_160 Hb_000575_050--Hb_000501_080 Hb_000575_050--Hb_174662_020 Hb_021888_160--Hb_000501_080 Hb_021888_160--Hb_174662_020 Hb_007810_080 Hb_007810_080 Hb_021888_160--Hb_007810_080 Hb_000501_080--Hb_174662_020 Hb_000501_080--Hb_007810_080 Hb_174662_020--Hb_007810_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.246127 0.25777

CAGE analysis