Hb_006907_110

Information

Type -
Description -
Location Contig6907: 55350-57629
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_110 0.0 - - -
2 Hb_000575_050 0.0008999734 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
3 Hb_021888_160 0.0032530296 - - -
4 Hb_000574_490 0.0078301969 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
5 Hb_000501_080 0.0109973493 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
6 Hb_174662_020 0.0113285624 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
7 Hb_003780_010 0.013519853 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007810_080 0.016319008 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
9 Hb_000190_130 0.0300702162 - - cysteine protease inhibitor [Populus tremula]
10 Hb_093039_010 0.0337337785 - - JHL22C18.10 [Jatropha curcas]
11 Hb_002110_220 0.0399821983 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007622_010 0.0437639949 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
13 Hb_042083_020 0.0446367556 - - -
14 Hb_002570_050 0.0520893398 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
15 Hb_002387_030 0.0546713916 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003940_060 0.0717236951 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
17 Hb_029695_040 0.0746829181 - - Pectate lyase precursor, putative [Ricinus communis]
18 Hb_000052_030 0.0753539854 - - -
19 Hb_001234_090 0.0756040536 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
20 Hb_003927_030 0.0766907207 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_006907_110 Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_006907_110--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_006907_110--Hb_021888_160 Hb_000574_490 Hb_000574_490 Hb_006907_110--Hb_000574_490 Hb_000501_080 Hb_000501_080 Hb_006907_110--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_006907_110--Hb_174662_020 Hb_003780_010 Hb_003780_010 Hb_006907_110--Hb_003780_010 Hb_000575_050--Hb_021888_160 Hb_000575_050--Hb_000574_490 Hb_000575_050--Hb_000501_080 Hb_000575_050--Hb_174662_020 Hb_000575_050--Hb_003780_010 Hb_021888_160--Hb_000501_080 Hb_021888_160--Hb_174662_020 Hb_021888_160--Hb_000574_490 Hb_007810_080 Hb_007810_080 Hb_021888_160--Hb_007810_080 Hb_000574_490--Hb_003780_010 Hb_000574_490--Hb_000501_080 Hb_000574_490--Hb_174662_020 Hb_000501_080--Hb_174662_020 Hb_000501_080--Hb_007810_080 Hb_174662_020--Hb_007810_080 Hb_000190_130 Hb_000190_130 Hb_003780_010--Hb_000190_130 Hb_003780_010--Hb_021888_160 Hb_093039_010 Hb_093039_010 Hb_003780_010--Hb_093039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.208597 0.226676

CAGE analysis