Hb_021888_160

Information

Type -
Description -
Location Contig21888: 119732-120322
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_160 0.0 - - -
2 Hb_000575_050 0.0023530586 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
3 Hb_006907_110 0.0032530296 - - -
4 Hb_000501_080 0.0077444163 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
5 Hb_174662_020 0.0080756366 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
6 Hb_000574_490 0.0110831283 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
7 Hb_007810_080 0.0130662204 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
8 Hb_003780_010 0.0167726264 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000190_130 0.0333221151 - - cysteine protease inhibitor [Populus tremula]
10 Hb_002110_220 0.0367308434 - - conserved hypothetical protein [Ricinus communis]
11 Hb_093039_010 0.0369854006 - - JHL22C18.10 [Jatropha curcas]
12 Hb_007622_010 0.040512989 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
13 Hb_042083_020 0.041385835 - - -
14 Hb_002387_030 0.0514215799 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002570_050 0.0553391193 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
16 Hb_003940_060 0.0684763155 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
17 Hb_029695_040 0.0714360317 - - Pectate lyase precursor, putative [Ricinus communis]
18 Hb_001234_090 0.0723573251 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
19 Hb_000052_030 0.0786003337 - - -
20 Hb_186634_010 0.0792404099 - - hypothetical protein JCGZ_18787 [Jatropha curcas]

Gene co-expression network

sample Hb_021888_160 Hb_021888_160 Hb_000575_050 Hb_000575_050 Hb_021888_160--Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_021888_160--Hb_006907_110 Hb_000501_080 Hb_000501_080 Hb_021888_160--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_021888_160--Hb_174662_020 Hb_000574_490 Hb_000574_490 Hb_021888_160--Hb_000574_490 Hb_007810_080 Hb_007810_080 Hb_021888_160--Hb_007810_080 Hb_000575_050--Hb_006907_110 Hb_000575_050--Hb_000574_490 Hb_000575_050--Hb_000501_080 Hb_000575_050--Hb_174662_020 Hb_003780_010 Hb_003780_010 Hb_000575_050--Hb_003780_010 Hb_006907_110--Hb_000574_490 Hb_006907_110--Hb_000501_080 Hb_006907_110--Hb_174662_020 Hb_006907_110--Hb_003780_010 Hb_000501_080--Hb_174662_020 Hb_000501_080--Hb_007810_080 Hb_000501_080--Hb_000574_490 Hb_174662_020--Hb_007810_080 Hb_174662_020--Hb_000574_490 Hb_000574_490--Hb_003780_010 Hb_007810_080--Hb_000575_050 Hb_007810_080--Hb_006907_110 Hb_002110_220 Hb_002110_220 Hb_007810_080--Hb_002110_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.19344 0.213454

CAGE analysis