Hb_003927_030

Information

Type -
Description -
Location Contig3927: 15018-17443
Sequence    

Annotation

kegg
ID cic:CICLE_v10030050mg
description hypothetical protein
nr
ID CDP08977.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9FN93
description Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1
trembl
ID A0A068UKY6
description Coffea canephora DH200=94 genomic scaffold, scaffold_36 OS=Coffea canephora GN=GSCOC_T00028131001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_030 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000052_030 0.0013394509 - - -
3 Hb_169597_010 0.0052082665 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
4 Hb_002570_050 0.0246357344 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
5 Hb_000946_020 0.0302655571 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
6 Hb_093039_010 0.0429956532 - - JHL22C18.10 [Jatropha curcas]
7 Hb_000190_130 0.0466579319 - - cysteine protease inhibitor [Populus tremula]
8 Hb_003780_010 0.063193617 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006261_010 0.0651571796 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
10 Hb_000574_490 0.0688748771 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
11 Hb_007757_090 0.071559242 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
12 Hb_006907_110 0.0766907207 - - -
13 Hb_000575_050 0.0775888367 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
14 Hb_005625_050 0.0793384515 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
15 Hb_021888_160 0.0799368343 - - -
16 Hb_000501_080 0.0876624378 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
17 Hb_174662_020 0.0879927797 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
18 Hb_007810_080 0.0929693954 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
19 Hb_019299_050 0.1011003533 - - -
20 Hb_002110_220 0.1165489985 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003927_030 Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_003927_030--Hb_000052_030 Hb_169597_010 Hb_169597_010 Hb_003927_030--Hb_169597_010 Hb_002570_050 Hb_002570_050 Hb_003927_030--Hb_002570_050 Hb_000946_020 Hb_000946_020 Hb_003927_030--Hb_000946_020 Hb_093039_010 Hb_093039_010 Hb_003927_030--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_003927_030--Hb_000190_130 Hb_000052_030--Hb_169597_010 Hb_000052_030--Hb_002570_050 Hb_000052_030--Hb_000946_020 Hb_000052_030--Hb_093039_010 Hb_000052_030--Hb_000190_130 Hb_169597_010--Hb_000946_020 Hb_169597_010--Hb_002570_050 Hb_169597_010--Hb_093039_010 Hb_169597_010--Hb_000190_130 Hb_002570_050--Hb_093039_010 Hb_002570_050--Hb_000190_130 Hb_003780_010 Hb_003780_010 Hb_002570_050--Hb_003780_010 Hb_006261_010 Hb_006261_010 Hb_000946_020--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_000946_020--Hb_007757_090 Hb_005625_050 Hb_005625_050 Hb_000946_020--Hb_005625_050 Hb_093039_010--Hb_000190_130 Hb_093039_010--Hb_003780_010 Hb_000574_490 Hb_000574_490 Hb_093039_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_093039_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_093039_010--Hb_000575_050 Hb_000190_130--Hb_003780_010 Hb_000190_130--Hb_000574_490 Hb_000190_130--Hb_006907_110 Hb_000190_130--Hb_000575_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.57836 1.95016

CAGE analysis