Hb_121689_030

Information

Type -
Description -
Location Contig121689: 22447-23646
Sequence    

Annotation

kegg
ID bdi:104585515
description uncharacterized LOC104585515
nr
ID WP_042855005.1
description hypothetical protein, partial [Staphylococcus aureus]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121689_030 0.0 - - hypothetical protein, partial [Staphylococcus aureus]
2 Hb_000173_090 0.0006592709 - - -
3 Hb_108160_010 0.0009014398 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_008145_020 0.0011683016 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
5 Hb_000208_070 0.0048178318 - - -
6 Hb_093458_030 0.0099381505 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
7 Hb_028665_010 0.0099466045 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
8 Hb_118909_010 0.0100403847 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
9 Hb_032683_010 0.0110600231 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_186634_010 0.0123770593 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
11 Hb_001234_090 0.0192740043 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
12 Hb_029695_040 0.0201969011 - - Pectate lyase precursor, putative [Ricinus communis]
13 Hb_003940_060 0.0231613693 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
14 Hb_000175_310 0.0321699924 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_109791_010 0.0388087852 - - -
16 Hb_002387_030 0.0402317713 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000684_460 0.04416925 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_115868_030 0.0450577141 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
19 Hb_042083_020 0.0502675639 - - -
20 Hb_007622_010 0.0511400977 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]

Gene co-expression network

sample Hb_121689_030 Hb_121689_030 Hb_000173_090 Hb_000173_090 Hb_121689_030--Hb_000173_090 Hb_108160_010 Hb_108160_010 Hb_121689_030--Hb_108160_010 Hb_008145_020 Hb_008145_020 Hb_121689_030--Hb_008145_020 Hb_000208_070 Hb_000208_070 Hb_121689_030--Hb_000208_070 Hb_093458_030 Hb_093458_030 Hb_121689_030--Hb_093458_030 Hb_028665_010 Hb_028665_010 Hb_121689_030--Hb_028665_010 Hb_000173_090--Hb_008145_020 Hb_000173_090--Hb_108160_010 Hb_000173_090--Hb_000208_070 Hb_000173_090--Hb_093458_030 Hb_000173_090--Hb_028665_010 Hb_108160_010--Hb_008145_020 Hb_108160_010--Hb_000208_070 Hb_118909_010 Hb_118909_010 Hb_108160_010--Hb_118909_010 Hb_108160_010--Hb_093458_030 Hb_008145_020--Hb_000208_070 Hb_008145_020--Hb_093458_030 Hb_008145_020--Hb_028665_010 Hb_000208_070--Hb_093458_030 Hb_000208_070--Hb_028665_010 Hb_093458_030--Hb_028665_010 Hb_032683_010 Hb_032683_010 Hb_093458_030--Hb_032683_010 Hb_028665_010--Hb_032683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0427669 0.0731322

CAGE analysis