Hb_032683_010

Information

Type -
Description -
Location Contig32683: 14475-19116
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032683_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_028665_010 0.0011134682 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
3 Hb_093458_030 0.0011219225 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
4 Hb_000208_070 0.0062423253 - - -
5 Hb_008145_020 0.0098917729 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_000173_090 0.0104007827 - - -
7 Hb_121689_030 0.0110600231 - - hypothetical protein, partial [Staphylococcus aureus]
8 Hb_108160_010 0.0119614151 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_118909_010 0.0210994754 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
10 Hb_000175_310 0.0211130675 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_186634_010 0.023435808 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_109791_010 0.0277537047 - - -
13 Hb_001234_090 0.0303314728 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
14 Hb_029695_040 0.0312541679 - - Pectate lyase precursor, putative [Ricinus communis]
15 Hb_000684_460 0.0331159719 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
16 Hb_115868_030 0.0340047621 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
17 Hb_003940_060 0.0342179396 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
18 Hb_067634_010 0.0432454777 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_000312_030 0.0435203474 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
20 Hb_153924_010 0.0504587858 - - hypothetical protein JCGZ_22941 [Jatropha curcas]

Gene co-expression network

sample Hb_032683_010 Hb_032683_010 Hb_028665_010 Hb_028665_010 Hb_032683_010--Hb_028665_010 Hb_093458_030 Hb_093458_030 Hb_032683_010--Hb_093458_030 Hb_000208_070 Hb_000208_070 Hb_032683_010--Hb_000208_070 Hb_008145_020 Hb_008145_020 Hb_032683_010--Hb_008145_020 Hb_000173_090 Hb_000173_090 Hb_032683_010--Hb_000173_090 Hb_121689_030 Hb_121689_030 Hb_032683_010--Hb_121689_030 Hb_028665_010--Hb_093458_030 Hb_028665_010--Hb_000208_070 Hb_028665_010--Hb_008145_020 Hb_028665_010--Hb_000173_090 Hb_028665_010--Hb_121689_030 Hb_093458_030--Hb_000208_070 Hb_093458_030--Hb_008145_020 Hb_093458_030--Hb_000173_090 Hb_093458_030--Hb_121689_030 Hb_000208_070--Hb_008145_020 Hb_000208_070--Hb_000173_090 Hb_000208_070--Hb_121689_030 Hb_108160_010 Hb_108160_010 Hb_000208_070--Hb_108160_010 Hb_008145_020--Hb_000173_090 Hb_008145_020--Hb_121689_030 Hb_008145_020--Hb_108160_010 Hb_000173_090--Hb_121689_030 Hb_000173_090--Hb_108160_010 Hb_121689_030--Hb_108160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00956027 0.0172583

CAGE analysis