Hb_000208_070

Information

Type -
Description -
Location Contig208: 76056-78446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_070 0.0 - - -
2 Hb_008145_020 0.0036495384 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
3 Hb_000173_090 0.0041585661 - - -
4 Hb_121689_030 0.0048178318 - - hypothetical protein, partial [Staphylococcus aureus]
5 Hb_093458_030 0.0051204174 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
6 Hb_028665_010 0.0051288717 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
7 Hb_108160_010 0.0057192617 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_032683_010 0.0062423253 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_118909_010 0.0148579319 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
10 Hb_186634_010 0.0171944858 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
11 Hb_001234_090 0.0240909564 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
12 Hb_029695_040 0.0250137766 - - Pectate lyase precursor, putative [Ricinus communis]
13 Hb_000175_310 0.0273538995 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_003940_060 0.0279779771 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
15 Hb_109791_010 0.0339935758 - - -
16 Hb_000684_460 0.0393548901 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_115868_030 0.040243507 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
18 Hb_002387_030 0.045046223 - - conserved hypothetical protein [Ricinus communis]
19 Hb_067634_010 0.0494821556 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
20 Hb_000312_030 0.0497569564 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000208_070 Hb_000208_070 Hb_008145_020 Hb_008145_020 Hb_000208_070--Hb_008145_020 Hb_000173_090 Hb_000173_090 Hb_000208_070--Hb_000173_090 Hb_121689_030 Hb_121689_030 Hb_000208_070--Hb_121689_030 Hb_093458_030 Hb_093458_030 Hb_000208_070--Hb_093458_030 Hb_028665_010 Hb_028665_010 Hb_000208_070--Hb_028665_010 Hb_108160_010 Hb_108160_010 Hb_000208_070--Hb_108160_010 Hb_008145_020--Hb_000173_090 Hb_008145_020--Hb_121689_030 Hb_008145_020--Hb_108160_010 Hb_008145_020--Hb_093458_030 Hb_008145_020--Hb_028665_010 Hb_000173_090--Hb_121689_030 Hb_000173_090--Hb_108160_010 Hb_000173_090--Hb_093458_030 Hb_000173_090--Hb_028665_010 Hb_121689_030--Hb_108160_010 Hb_121689_030--Hb_093458_030 Hb_121689_030--Hb_028665_010 Hb_093458_030--Hb_028665_010 Hb_032683_010 Hb_032683_010 Hb_093458_030--Hb_032683_010 Hb_028665_010--Hb_032683_010 Hb_118909_010 Hb_118909_010 Hb_108160_010--Hb_118909_010 Hb_108160_010--Hb_093458_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0281112 0.0492161

CAGE analysis