Hb_108160_010

Information

Type -
Description -
Location Contig108160: 11-1180
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108160_010 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_121689_030 0.0009014398 - - hypothetical protein, partial [Staphylococcus aureus]
3 Hb_000173_090 0.0015607104 - - -
4 Hb_008145_020 0.0020697405 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
5 Hb_000208_070 0.0057192617 - - -
6 Hb_118909_010 0.0091389775 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
7 Hb_093458_030 0.0108395514 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
8 Hb_028665_010 0.0108480054 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
9 Hb_186634_010 0.0114756699 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
10 Hb_032683_010 0.0119614151 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_001234_090 0.0183726894 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
12 Hb_029695_040 0.0192955988 - - Pectate lyase precursor, putative [Ricinus communis]
13 Hb_003940_060 0.0222601109 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
14 Hb_000175_310 0.0330710408 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_002387_030 0.0393308814 - - conserved hypothetical protein [Ricinus communis]
16 Hb_109791_010 0.0397096548 - - -
17 Hb_000684_460 0.0450699497 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_115868_030 0.0459583834 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
19 Hb_042083_020 0.0493669805 - - -
20 Hb_007622_010 0.0502395441 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]

Gene co-expression network

sample Hb_108160_010 Hb_108160_010 Hb_121689_030 Hb_121689_030 Hb_108160_010--Hb_121689_030 Hb_000173_090 Hb_000173_090 Hb_108160_010--Hb_000173_090 Hb_008145_020 Hb_008145_020 Hb_108160_010--Hb_008145_020 Hb_000208_070 Hb_000208_070 Hb_108160_010--Hb_000208_070 Hb_118909_010 Hb_118909_010 Hb_108160_010--Hb_118909_010 Hb_093458_030 Hb_093458_030 Hb_108160_010--Hb_093458_030 Hb_121689_030--Hb_000173_090 Hb_121689_030--Hb_008145_020 Hb_121689_030--Hb_000208_070 Hb_121689_030--Hb_093458_030 Hb_028665_010 Hb_028665_010 Hb_121689_030--Hb_028665_010 Hb_000173_090--Hb_008145_020 Hb_000173_090--Hb_000208_070 Hb_000173_090--Hb_093458_030 Hb_000173_090--Hb_028665_010 Hb_008145_020--Hb_000208_070 Hb_008145_020--Hb_093458_030 Hb_008145_020--Hb_028665_010 Hb_000208_070--Hb_093458_030 Hb_000208_070--Hb_028665_010 Hb_186634_010 Hb_186634_010 Hb_118909_010--Hb_186634_010 Hb_001234_090 Hb_001234_090 Hb_118909_010--Hb_001234_090 Hb_118909_010--Hb_121689_030 Hb_029695_040 Hb_029695_040 Hb_118909_010--Hb_029695_040 Hb_118909_010--Hb_000173_090 Hb_093458_030--Hb_028665_010 Hb_032683_010 Hb_032683_010 Hb_093458_030--Hb_032683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0455421 0.0775361

CAGE analysis