Hb_001234_090

Information

Type -
Description -
Location Contig1234: 132653-134242
Sequence    

Annotation

kegg
ID cic:CICLE_v10004977mg
description hypothetical protein
nr
ID KDO51966.1
description hypothetical protein CISIN_1g013527mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067ELZ3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013527mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 036_M17r.ab1: 131125-141891

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001234_090 0.0 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
2 Hb_029695_040 0.0009230356 - - Pectate lyase precursor, putative [Ricinus communis]
3 Hb_003940_060 0.0038880336 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
4 Hb_186634_010 0.0068975836 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_118909_010 0.0092343144 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
6 Hb_108160_010 0.0183726894 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_121689_030 0.0192740043 - - hypothetical protein, partial [Staphylococcus aureus]
8 Hb_000173_090 0.0199331759 - - -
9 Hb_008145_020 0.0204421254 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
10 Hb_002387_030 0.0209639559 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000208_070 0.0240909564 - - -
12 Hb_093458_030 0.0292099461 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
13 Hb_028665_010 0.0292183976 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
14 Hb_032683_010 0.0303314728 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_042083_020 0.0310049211 - - -
16 Hb_007622_010 0.031877971 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
17 Hb_002110_220 0.0356605404 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000175_310 0.051431182 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_109791_010 0.0580652397 - - -
20 Hb_007810_080 0.0593110705 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]

Gene co-expression network

sample Hb_001234_090 Hb_001234_090 Hb_029695_040 Hb_029695_040 Hb_001234_090--Hb_029695_040 Hb_003940_060 Hb_003940_060 Hb_001234_090--Hb_003940_060 Hb_186634_010 Hb_186634_010 Hb_001234_090--Hb_186634_010 Hb_118909_010 Hb_118909_010 Hb_001234_090--Hb_118909_010 Hb_108160_010 Hb_108160_010 Hb_001234_090--Hb_108160_010 Hb_121689_030 Hb_121689_030 Hb_001234_090--Hb_121689_030 Hb_029695_040--Hb_003940_060 Hb_029695_040--Hb_186634_010 Hb_029695_040--Hb_118909_010 Hb_029695_040--Hb_108160_010 Hb_002387_030 Hb_002387_030 Hb_029695_040--Hb_002387_030 Hb_003940_060--Hb_186634_010 Hb_003940_060--Hb_118909_010 Hb_003940_060--Hb_002387_030 Hb_003940_060--Hb_108160_010 Hb_186634_010--Hb_118909_010 Hb_186634_010--Hb_108160_010 Hb_186634_010--Hb_121689_030 Hb_118909_010--Hb_108160_010 Hb_118909_010--Hb_121689_030 Hb_000173_090 Hb_000173_090 Hb_118909_010--Hb_000173_090 Hb_108160_010--Hb_121689_030 Hb_108160_010--Hb_000173_090 Hb_008145_020 Hb_008145_020 Hb_108160_010--Hb_008145_020 Hb_000208_070 Hb_000208_070 Hb_108160_010--Hb_000208_070 Hb_093458_030 Hb_093458_030 Hb_108160_010--Hb_093458_030 Hb_121689_030--Hb_000173_090 Hb_121689_030--Hb_008145_020 Hb_121689_030--Hb_000208_070 Hb_121689_030--Hb_093458_030 Hb_028665_010 Hb_028665_010 Hb_121689_030--Hb_028665_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.710163 1.10597

CAGE analysis