Hb_029695_040

Information

Type -
Description -
Location Contig29695: 20165-20969
Sequence    

Annotation

kegg
ID rcu:RCOM_0521920
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_002522747.1
description Pectate lyase precursor, putative [Ricinus communis]
swissprot
ID Q9FM66
description Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1
trembl
ID B9S9S8
description Pectate lyase OS=Ricinus communis GN=RCOM_0521920 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31055: 20931-21120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_040 0.0 - - Pectate lyase precursor, putative [Ricinus communis]
2 Hb_001234_090 0.0009230356 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
3 Hb_003940_060 0.002965002 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
4 Hb_186634_010 0.0078206002 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_118909_010 0.0101573168 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
6 Hb_108160_010 0.0192955988 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_002387_030 0.020041066 - - conserved hypothetical protein [Ricinus communis]
8 Hb_121689_030 0.0201969011 - - hypothetical protein, partial [Staphylococcus aureus]
9 Hb_000173_090 0.0208560633 - - -
10 Hb_008145_020 0.0213650052 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
11 Hb_000208_070 0.0250137766 - - -
12 Hb_042083_020 0.0300822071 - - -
13 Hb_093458_030 0.0301326658 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
14 Hb_028665_010 0.0301411171 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
15 Hb_007622_010 0.0309552754 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
16 Hb_032683_010 0.0312541679 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_002110_220 0.0347379307 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000175_310 0.052353235 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_007810_080 0.05838921 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
20 Hb_109791_010 0.0589870187 - - -

Gene co-expression network

sample Hb_029695_040 Hb_029695_040 Hb_001234_090 Hb_001234_090 Hb_029695_040--Hb_001234_090 Hb_003940_060 Hb_003940_060 Hb_029695_040--Hb_003940_060 Hb_186634_010 Hb_186634_010 Hb_029695_040--Hb_186634_010 Hb_118909_010 Hb_118909_010 Hb_029695_040--Hb_118909_010 Hb_108160_010 Hb_108160_010 Hb_029695_040--Hb_108160_010 Hb_002387_030 Hb_002387_030 Hb_029695_040--Hb_002387_030 Hb_001234_090--Hb_003940_060 Hb_001234_090--Hb_186634_010 Hb_001234_090--Hb_118909_010 Hb_001234_090--Hb_108160_010 Hb_121689_030 Hb_121689_030 Hb_001234_090--Hb_121689_030 Hb_003940_060--Hb_186634_010 Hb_003940_060--Hb_118909_010 Hb_003940_060--Hb_002387_030 Hb_003940_060--Hb_108160_010 Hb_186634_010--Hb_118909_010 Hb_186634_010--Hb_108160_010 Hb_186634_010--Hb_121689_030 Hb_118909_010--Hb_108160_010 Hb_118909_010--Hb_121689_030 Hb_000173_090 Hb_000173_090 Hb_118909_010--Hb_000173_090 Hb_108160_010--Hb_121689_030 Hb_108160_010--Hb_000173_090 Hb_008145_020 Hb_008145_020 Hb_108160_010--Hb_008145_020 Hb_000208_070 Hb_000208_070 Hb_108160_010--Hb_000208_070 Hb_093458_030 Hb_093458_030 Hb_108160_010--Hb_093458_030 Hb_042083_020 Hb_042083_020 Hb_002387_030--Hb_042083_020 Hb_007622_010 Hb_007622_010 Hb_002387_030--Hb_007622_010 Hb_002110_220 Hb_002110_220 Hb_002387_030--Hb_002110_220 Hb_002387_030--Hb_001234_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.107611 0.166843

CAGE analysis