Hb_000312_030

Information

Type -
Description -
Location Contig312: 48448-50521
Sequence    

Annotation

kegg
ID bvg:104888072
description uncharacterized LOC104888072
nr
ID XP_010671205.1
description PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCJ8
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000312_030 0.0 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
2 Hb_067634_010 0.0002750998 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
3 Hb_153924_010 0.0069452669 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
4 Hb_056506_090 0.0076968558 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
5 Hb_115868_030 0.0095217866 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
6 Hb_000684_460 0.0104109726 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_109791_010 0.0157749743 - - -
8 Hb_005465_050 0.0193859373 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
9 Hb_000175_310 0.022416226 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_105251_010 0.0248412626 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_003793_040 0.0262958983 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
12 Hb_001102_280 0.0276146368 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_031318_010 0.029437791 - - -
14 Hb_152910_030 0.0294403146 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
15 Hb_000127_150 0.0296908828 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
16 Hb_015866_010 0.0297989969 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_001833_030 0.0299475928 - - polyprotein [Oryza australiensis]
18 Hb_001216_020 0.0303668366 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
19 Hb_001980_040 0.0321988779 - - -
20 Hb_186064_010 0.0352885187 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000312_030 Hb_000312_030 Hb_067634_010 Hb_067634_010 Hb_000312_030--Hb_067634_010 Hb_153924_010 Hb_153924_010 Hb_000312_030--Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_000312_030--Hb_056506_090 Hb_115868_030 Hb_115868_030 Hb_000312_030--Hb_115868_030 Hb_000684_460 Hb_000684_460 Hb_000312_030--Hb_000684_460 Hb_109791_010 Hb_109791_010 Hb_000312_030--Hb_109791_010 Hb_067634_010--Hb_153924_010 Hb_067634_010--Hb_056506_090 Hb_067634_010--Hb_115868_030 Hb_067634_010--Hb_000684_460 Hb_067634_010--Hb_109791_010 Hb_153924_010--Hb_056506_090 Hb_005465_050 Hb_005465_050 Hb_153924_010--Hb_005465_050 Hb_153924_010--Hb_115868_030 Hb_153924_010--Hb_000684_460 Hb_056506_090--Hb_005465_050 Hb_105251_010 Hb_105251_010 Hb_056506_090--Hb_105251_010 Hb_056506_090--Hb_115868_030 Hb_115868_030--Hb_000684_460 Hb_115868_030--Hb_109791_010 Hb_000175_310 Hb_000175_310 Hb_115868_030--Hb_000175_310 Hb_000684_460--Hb_109791_010 Hb_000684_460--Hb_000175_310 Hb_109791_010--Hb_000175_310 Hb_109791_010--Hb_153924_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0697856 0.156629

CAGE analysis