Hb_005465_050

Information

Type -
Description -
Location Contig5465: 42125-43258
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012074506.1
description PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0P5S7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_28234 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005465_050 0.0 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
2 Hb_105251_010 0.0054566158 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_003793_040 0.0069116944 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
4 Hb_001102_280 0.0082308708 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_031318_010 0.0100546876 - - -
6 Hb_152910_030 0.0100572121 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
7 Hb_000127_150 0.0103078766 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
8 Hb_015866_010 0.0104160326 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
9 Hb_001833_030 0.0105646866 - - polyprotein [Oryza australiensis]
10 Hb_001216_020 0.0109840965 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
11 Hb_056506_090 0.0116899206 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
12 Hb_153924_010 0.0124414755 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
13 Hb_001980_040 0.0128169053 - - -
14 Hb_186064_010 0.0159079951 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_033165_010 0.0165446201 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000312_030 0.0193859373 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
17 Hb_067634_010 0.0196609871 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
18 Hb_115868_030 0.0289052086 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
19 Hb_000684_460 0.029794078 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_093161_010 0.0315601109 - - -

Gene co-expression network

sample Hb_005465_050 Hb_005465_050 Hb_105251_010 Hb_105251_010 Hb_005465_050--Hb_105251_010 Hb_003793_040 Hb_003793_040 Hb_005465_050--Hb_003793_040 Hb_001102_280 Hb_001102_280 Hb_005465_050--Hb_001102_280 Hb_031318_010 Hb_031318_010 Hb_005465_050--Hb_031318_010 Hb_152910_030 Hb_152910_030 Hb_005465_050--Hb_152910_030 Hb_000127_150 Hb_000127_150 Hb_005465_050--Hb_000127_150 Hb_105251_010--Hb_003793_040 Hb_105251_010--Hb_001102_280 Hb_105251_010--Hb_031318_010 Hb_105251_010--Hb_152910_030 Hb_105251_010--Hb_000127_150 Hb_015866_010 Hb_015866_010 Hb_105251_010--Hb_015866_010 Hb_003793_040--Hb_001102_280 Hb_003793_040--Hb_031318_010 Hb_003793_040--Hb_152910_030 Hb_003793_040--Hb_000127_150 Hb_003793_040--Hb_015866_010 Hb_001102_280--Hb_031318_010 Hb_001102_280--Hb_152910_030 Hb_001102_280--Hb_000127_150 Hb_001102_280--Hb_015866_010 Hb_001833_030 Hb_001833_030 Hb_001102_280--Hb_001833_030 Hb_031318_010--Hb_152910_030 Hb_031318_010--Hb_000127_150 Hb_031318_010--Hb_015866_010 Hb_031318_010--Hb_001833_030 Hb_001216_020 Hb_001216_020 Hb_031318_010--Hb_001216_020 Hb_152910_030--Hb_000127_150 Hb_152910_030--Hb_015866_010 Hb_152910_030--Hb_001833_030 Hb_152910_030--Hb_001216_020 Hb_000127_150--Hb_015866_010 Hb_000127_150--Hb_001833_030 Hb_000127_150--Hb_001216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0428839 0.106357

CAGE analysis