Hb_001216_020

Information

Type -
Description -
Location Contig1216: 15005-17351
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID ABA99022.2
description retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID Q2QQ28
description Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g32440 PE=4 SV=2
Gene Ontology
ID GO:0043167
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001216_020 0.0 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
2 Hb_001833_030 0.0004194349 - - polyprotein [Oryza australiensis]
3 Hb_015866_010 0.0005680973 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
4 Hb_000127_150 0.0006762592 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
5 Hb_152910_030 0.000926937 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
6 Hb_031318_010 0.0009294616 - - -
7 Hb_001980_040 0.0018329417 - - -
8 Hb_001102_280 0.0027533532 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_003793_040 0.0040725601 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
10 Hb_186064_010 0.0049243435 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_105251_010 0.0055276498 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_033165_010 0.0055610465 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_005465_050 0.0109840965 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
14 Hb_093161_010 0.0205797799 - - -
15 Hb_056506_090 0.0226725638 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_153924_010 0.0234239756 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
17 Hb_174258_010 0.0269831962 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
18 Hb_000312_030 0.0303668366 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
19 Hb_067634_010 0.0306418129 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
20 Hb_001755_010 0.0332908118 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]

Gene co-expression network

sample Hb_001216_020 Hb_001216_020 Hb_001833_030 Hb_001833_030 Hb_001216_020--Hb_001833_030 Hb_015866_010 Hb_015866_010 Hb_001216_020--Hb_015866_010 Hb_000127_150 Hb_000127_150 Hb_001216_020--Hb_000127_150 Hb_152910_030 Hb_152910_030 Hb_001216_020--Hb_152910_030 Hb_031318_010 Hb_031318_010 Hb_001216_020--Hb_031318_010 Hb_001980_040 Hb_001980_040 Hb_001216_020--Hb_001980_040 Hb_001833_030--Hb_015866_010 Hb_001833_030--Hb_000127_150 Hb_001833_030--Hb_152910_030 Hb_001833_030--Hb_031318_010 Hb_001833_030--Hb_001980_040 Hb_015866_010--Hb_000127_150 Hb_015866_010--Hb_152910_030 Hb_015866_010--Hb_031318_010 Hb_001102_280 Hb_001102_280 Hb_015866_010--Hb_001102_280 Hb_000127_150--Hb_152910_030 Hb_000127_150--Hb_031318_010 Hb_000127_150--Hb_001102_280 Hb_152910_030--Hb_031318_010 Hb_152910_030--Hb_001102_280 Hb_031318_010--Hb_001102_280 Hb_001980_040--Hb_015866_010 Hb_001980_040--Hb_000127_150 Hb_001980_040--Hb_152910_030 Hb_001980_040--Hb_031318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0186165 0.0489045

CAGE analysis