Hb_001980_040

Information

Type -
Description -
Location Contig1980: 65541-71562
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001980_040 0.0 - - -
2 Hb_001216_020 0.0018329417 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
3 Hb_001833_030 0.0022523757 - - polyprotein [Oryza australiensis]
4 Hb_015866_010 0.0024010377 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_000127_150 0.0025091993 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
6 Hb_152910_030 0.0027598762 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
7 Hb_031318_010 0.0027624009 - - -
8 Hb_186064_010 0.0030914165 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_033165_010 0.0037281248 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001102_280 0.0045862828 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_003793_040 0.0059054789 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
12 Hb_105251_010 0.0073605528 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_005465_050 0.0128169053 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
14 Hb_093161_010 0.0187472179 - - -
15 Hb_056506_090 0.0245049889 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_174258_010 0.0251509283 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
17 Hb_153924_010 0.0252563677 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
18 Hb_001755_010 0.0314589189 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
19 Hb_000312_030 0.0321988779 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
20 Hb_067634_010 0.0324738386 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_001980_040 Hb_001980_040 Hb_001216_020 Hb_001216_020 Hb_001980_040--Hb_001216_020 Hb_001833_030 Hb_001833_030 Hb_001980_040--Hb_001833_030 Hb_015866_010 Hb_015866_010 Hb_001980_040--Hb_015866_010 Hb_000127_150 Hb_000127_150 Hb_001980_040--Hb_000127_150 Hb_152910_030 Hb_152910_030 Hb_001980_040--Hb_152910_030 Hb_031318_010 Hb_031318_010 Hb_001980_040--Hb_031318_010 Hb_001216_020--Hb_001833_030 Hb_001216_020--Hb_015866_010 Hb_001216_020--Hb_000127_150 Hb_001216_020--Hb_152910_030 Hb_001216_020--Hb_031318_010 Hb_001833_030--Hb_015866_010 Hb_001833_030--Hb_000127_150 Hb_001833_030--Hb_152910_030 Hb_001833_030--Hb_031318_010 Hb_015866_010--Hb_000127_150 Hb_015866_010--Hb_152910_030 Hb_015866_010--Hb_031318_010 Hb_001102_280 Hb_001102_280 Hb_015866_010--Hb_001102_280 Hb_000127_150--Hb_152910_030 Hb_000127_150--Hb_031318_010 Hb_000127_150--Hb_001102_280 Hb_152910_030--Hb_031318_010 Hb_152910_030--Hb_001102_280 Hb_031318_010--Hb_001102_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0440126 0.116742

CAGE analysis