Hb_000175_310

Information

Type -
Description -
Location Contig175: 190586-190969
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_310 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_109791_010 0.0066423016 - - -
3 Hb_000684_460 0.012006513 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_115868_030 0.012895678 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
5 Hb_032683_010 0.0211130675 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_067634_010 0.0221411883 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
7 Hb_028665_010 0.0222263182 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
8 Hb_093458_030 0.0222347709 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
9 Hb_000312_030 0.022416226 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
10 Hb_000208_070 0.0273538995 - - -
11 Hb_153924_010 0.029359399 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
12 Hb_056506_090 0.0301106999 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
13 Hb_008145_020 0.0310021672 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
14 Hb_000173_090 0.0315109946 - - -
15 Hb_121689_030 0.0321699924 - - hypothetical protein, partial [Staphylococcus aureus]
16 Hb_108160_010 0.0330710408 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_005465_050 0.0417937267 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
18 Hb_118909_010 0.0422048567 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
19 Hb_186634_010 0.0445398842 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
20 Hb_105251_010 0.0472451919 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_310 Hb_000175_310 Hb_109791_010 Hb_109791_010 Hb_000175_310--Hb_109791_010 Hb_000684_460 Hb_000684_460 Hb_000175_310--Hb_000684_460 Hb_115868_030 Hb_115868_030 Hb_000175_310--Hb_115868_030 Hb_032683_010 Hb_032683_010 Hb_000175_310--Hb_032683_010 Hb_067634_010 Hb_067634_010 Hb_000175_310--Hb_067634_010 Hb_028665_010 Hb_028665_010 Hb_000175_310--Hb_028665_010 Hb_109791_010--Hb_000684_460 Hb_109791_010--Hb_115868_030 Hb_109791_010--Hb_067634_010 Hb_000312_030 Hb_000312_030 Hb_109791_010--Hb_000312_030 Hb_153924_010 Hb_153924_010 Hb_109791_010--Hb_153924_010 Hb_000684_460--Hb_115868_030 Hb_000684_460--Hb_067634_010 Hb_000684_460--Hb_000312_030 Hb_000684_460--Hb_153924_010 Hb_115868_030--Hb_067634_010 Hb_115868_030--Hb_000312_030 Hb_115868_030--Hb_153924_010 Hb_032683_010--Hb_028665_010 Hb_093458_030 Hb_093458_030 Hb_032683_010--Hb_093458_030 Hb_000208_070 Hb_000208_070 Hb_032683_010--Hb_000208_070 Hb_008145_020 Hb_008145_020 Hb_032683_010--Hb_008145_020 Hb_000173_090 Hb_000173_090 Hb_032683_010--Hb_000173_090 Hb_121689_030 Hb_121689_030 Hb_032683_010--Hb_121689_030 Hb_067634_010--Hb_000312_030 Hb_067634_010--Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_067634_010--Hb_056506_090 Hb_028665_010--Hb_093458_030 Hb_028665_010--Hb_000208_070 Hb_028665_010--Hb_008145_020 Hb_028665_010--Hb_000173_090 Hb_028665_010--Hb_121689_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.146534 0.293703

CAGE analysis