Hb_056506_090

Information

Type -
Description -
Location Contig56506: 46001-46573
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023969mg
description hypothetical protein
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48994: 46520-46849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_090 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_153924_010 0.0007516079 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
3 Hb_000312_030 0.0076968558 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
4 Hb_067634_010 0.0079719477 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
5 Hb_005465_050 0.0116899206 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
6 Hb_105251_010 0.0171459941 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_115868_030 0.0172180554 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
8 Hb_000684_460 0.0181071542 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_003793_040 0.0186008685 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
10 Hb_001102_280 0.0199198379 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_031318_010 0.0217433339 - - -
12 Hb_152910_030 0.0217458579 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
13 Hb_000127_150 0.0219964752 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
14 Hb_015866_010 0.0221046106 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
15 Hb_001833_030 0.022253236 - - polyprotein [Oryza australiensis]
16 Hb_001216_020 0.0226725638 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
17 Hb_109791_010 0.0234705138 - - -
18 Hb_001980_040 0.0245049889 - - -
19 Hb_186064_010 0.0275953381 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_033165_010 0.0282317959 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_056506_090 Hb_056506_090 Hb_153924_010 Hb_153924_010 Hb_056506_090--Hb_153924_010 Hb_000312_030 Hb_000312_030 Hb_056506_090--Hb_000312_030 Hb_067634_010 Hb_067634_010 Hb_056506_090--Hb_067634_010 Hb_005465_050 Hb_005465_050 Hb_056506_090--Hb_005465_050 Hb_105251_010 Hb_105251_010 Hb_056506_090--Hb_105251_010 Hb_115868_030 Hb_115868_030 Hb_056506_090--Hb_115868_030 Hb_153924_010--Hb_000312_030 Hb_153924_010--Hb_067634_010 Hb_153924_010--Hb_005465_050 Hb_153924_010--Hb_115868_030 Hb_000684_460 Hb_000684_460 Hb_153924_010--Hb_000684_460 Hb_000312_030--Hb_067634_010 Hb_000312_030--Hb_115868_030 Hb_000312_030--Hb_000684_460 Hb_109791_010 Hb_109791_010 Hb_000312_030--Hb_109791_010 Hb_067634_010--Hb_115868_030 Hb_067634_010--Hb_000684_460 Hb_067634_010--Hb_109791_010 Hb_005465_050--Hb_105251_010 Hb_003793_040 Hb_003793_040 Hb_005465_050--Hb_003793_040 Hb_001102_280 Hb_001102_280 Hb_005465_050--Hb_001102_280 Hb_031318_010 Hb_031318_010 Hb_005465_050--Hb_031318_010 Hb_152910_030 Hb_152910_030 Hb_005465_050--Hb_152910_030 Hb_000127_150 Hb_000127_150 Hb_005465_050--Hb_000127_150 Hb_105251_010--Hb_003793_040 Hb_105251_010--Hb_001102_280 Hb_105251_010--Hb_031318_010 Hb_105251_010--Hb_152910_030 Hb_105251_010--Hb_000127_150 Hb_015866_010 Hb_015866_010 Hb_105251_010--Hb_015866_010 Hb_115868_030--Hb_000684_460 Hb_115868_030--Hb_109791_010 Hb_000175_310 Hb_000175_310 Hb_115868_030--Hb_000175_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0699536 0.163316

CAGE analysis