Hb_067634_010

Information

Type -
Description -
Location Contig67634: 70-564
Sequence    

Annotation

kegg
ID cic:CICLE_v10006890mg
description hypothetical protein
nr
ID XP_006421106.1
description hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4SBL0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006890mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006890mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067634_010 0.0 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
2 Hb_000312_030 0.0002750998 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
3 Hb_153924_010 0.0072203602 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
4 Hb_056506_090 0.0079719477 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
5 Hb_115868_030 0.009246698 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
6 Hb_000684_460 0.0101358862 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_109791_010 0.0154999053 - - -
8 Hb_005465_050 0.0196609871 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
9 Hb_000175_310 0.0221411883 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_105251_010 0.02511628 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_003793_040 0.0265709057 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
12 Hb_001102_280 0.0278896346 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_031318_010 0.0297127748 - - -
14 Hb_152910_030 0.0297152983 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
15 Hb_000127_150 0.0299658645 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
16 Hb_015866_010 0.0300739777 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_001833_030 0.0302225725 - - polyprotein [Oryza australiensis]
18 Hb_001216_020 0.0306418129 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
19 Hb_001980_040 0.0324738386 - - -
20 Hb_186064_010 0.0355634508 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_067634_010 Hb_067634_010 Hb_000312_030 Hb_000312_030 Hb_067634_010--Hb_000312_030 Hb_153924_010 Hb_153924_010 Hb_067634_010--Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_067634_010--Hb_056506_090 Hb_115868_030 Hb_115868_030 Hb_067634_010--Hb_115868_030 Hb_000684_460 Hb_000684_460 Hb_067634_010--Hb_000684_460 Hb_109791_010 Hb_109791_010 Hb_067634_010--Hb_109791_010 Hb_000312_030--Hb_153924_010 Hb_000312_030--Hb_056506_090 Hb_000312_030--Hb_115868_030 Hb_000312_030--Hb_000684_460 Hb_000312_030--Hb_109791_010 Hb_153924_010--Hb_056506_090 Hb_005465_050 Hb_005465_050 Hb_153924_010--Hb_005465_050 Hb_153924_010--Hb_115868_030 Hb_153924_010--Hb_000684_460 Hb_056506_090--Hb_005465_050 Hb_105251_010 Hb_105251_010 Hb_056506_090--Hb_105251_010 Hb_056506_090--Hb_115868_030 Hb_115868_030--Hb_000684_460 Hb_115868_030--Hb_109791_010 Hb_000175_310 Hb_000175_310 Hb_115868_030--Hb_000175_310 Hb_000684_460--Hb_109791_010 Hb_000684_460--Hb_000175_310 Hb_109791_010--Hb_000175_310 Hb_109791_010--Hb_153924_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0892122 0.19995

CAGE analysis