Hb_000684_460

Information

Type -
Description -
Location Contig684: 435403-435834
Sequence    

Annotation

kegg
ID tcc:TCM_038803
description Gag protease polyprotein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_460 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_115868_030 0.0008892262 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
3 Hb_109791_010 0.0053644005 - - -
4 Hb_067634_010 0.0101358862 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
5 Hb_000312_030 0.0104109726 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
6 Hb_000175_310 0.012006513 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_153924_010 0.0173556569 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
8 Hb_056506_090 0.0181071542 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
9 Hb_005465_050 0.029794078 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
10 Hb_032683_010 0.0331159719 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_028665_010 0.0342289089 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
12 Hb_093458_030 0.0342373591 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
13 Hb_105251_010 0.0352479149 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_003793_040 0.0367021009 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
15 Hb_001102_280 0.0380204123 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000208_070 0.0393548901 - - -
17 Hb_031318_010 0.0398429454 - - -
18 Hb_152910_030 0.0398454681 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
19 Hb_000127_150 0.0400959481 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
20 Hb_015866_010 0.040204024 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_460 Hb_000684_460 Hb_115868_030 Hb_115868_030 Hb_000684_460--Hb_115868_030 Hb_109791_010 Hb_109791_010 Hb_000684_460--Hb_109791_010 Hb_067634_010 Hb_067634_010 Hb_000684_460--Hb_067634_010 Hb_000312_030 Hb_000312_030 Hb_000684_460--Hb_000312_030 Hb_000175_310 Hb_000175_310 Hb_000684_460--Hb_000175_310 Hb_153924_010 Hb_153924_010 Hb_000684_460--Hb_153924_010 Hb_115868_030--Hb_109791_010 Hb_115868_030--Hb_067634_010 Hb_115868_030--Hb_000312_030 Hb_115868_030--Hb_000175_310 Hb_115868_030--Hb_153924_010 Hb_109791_010--Hb_000175_310 Hb_109791_010--Hb_067634_010 Hb_109791_010--Hb_000312_030 Hb_109791_010--Hb_153924_010 Hb_067634_010--Hb_000312_030 Hb_067634_010--Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_067634_010--Hb_056506_090 Hb_000312_030--Hb_153924_010 Hb_000312_030--Hb_056506_090 Hb_032683_010 Hb_032683_010 Hb_000175_310--Hb_032683_010 Hb_000175_310--Hb_067634_010 Hb_028665_010 Hb_028665_010 Hb_000175_310--Hb_028665_010 Hb_153924_010--Hb_056506_090 Hb_005465_050 Hb_005465_050 Hb_153924_010--Hb_005465_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.114701 0.244191

CAGE analysis