Hb_153924_010

Information

Type -
Description -
Location Contig153924: 28-591
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID KDP25993.1
description hypothetical protein JCGZ_22941 [Jatropha curcas]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID A0A067JT46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22941 PE=4 SV=1
Gene Ontology
ID GO:0003824
description hypothetical protein JCGZ_22941

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153924_010 0.0 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
2 Hb_056506_090 0.0007516079 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
3 Hb_000312_030 0.0069452669 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
4 Hb_067634_010 0.0072203602 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
5 Hb_005465_050 0.0124414755 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
6 Hb_115868_030 0.0164665474 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
7 Hb_000684_460 0.0173556569 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_105251_010 0.0178974894 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_003793_040 0.0193523441 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
10 Hb_001102_280 0.0206712942 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_031318_010 0.0224947613 - - -
12 Hb_152910_030 0.0224972853 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
13 Hb_109791_010 0.0227190924 - - -
14 Hb_000127_150 0.0227478984 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
15 Hb_015866_010 0.022856032 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_001833_030 0.0230046549 - - polyprotein [Oryza australiensis]
17 Hb_001216_020 0.0234239756 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
18 Hb_001980_040 0.0252563677 - - -
19 Hb_186064_010 0.0283466553 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_033165_010 0.0289830995 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_153924_010 Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_153924_010--Hb_056506_090 Hb_000312_030 Hb_000312_030 Hb_153924_010--Hb_000312_030 Hb_067634_010 Hb_067634_010 Hb_153924_010--Hb_067634_010 Hb_005465_050 Hb_005465_050 Hb_153924_010--Hb_005465_050 Hb_115868_030 Hb_115868_030 Hb_153924_010--Hb_115868_030 Hb_000684_460 Hb_000684_460 Hb_153924_010--Hb_000684_460 Hb_056506_090--Hb_000312_030 Hb_056506_090--Hb_067634_010 Hb_056506_090--Hb_005465_050 Hb_105251_010 Hb_105251_010 Hb_056506_090--Hb_105251_010 Hb_056506_090--Hb_115868_030 Hb_000312_030--Hb_067634_010 Hb_000312_030--Hb_115868_030 Hb_000312_030--Hb_000684_460 Hb_109791_010 Hb_109791_010 Hb_000312_030--Hb_109791_010 Hb_067634_010--Hb_115868_030 Hb_067634_010--Hb_000684_460 Hb_067634_010--Hb_109791_010 Hb_005465_050--Hb_105251_010 Hb_003793_040 Hb_003793_040 Hb_005465_050--Hb_003793_040 Hb_001102_280 Hb_001102_280 Hb_005465_050--Hb_001102_280 Hb_031318_010 Hb_031318_010 Hb_005465_050--Hb_031318_010 Hb_152910_030 Hb_152910_030 Hb_005465_050--Hb_152910_030 Hb_000127_150 Hb_000127_150 Hb_005465_050--Hb_000127_150 Hb_115868_030--Hb_000684_460 Hb_115868_030--Hb_109791_010 Hb_000175_310 Hb_000175_310 Hb_115868_030--Hb_000175_310 Hb_000684_460--Hb_109791_010 Hb_000684_460--Hb_000175_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0717408 0.166843

CAGE analysis