Hb_109791_010

Information

Type -
Description -
Location Contig109791: 45-519
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109791_010 0.0 - - -
2 Hb_000684_460 0.0053644005 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_115868_030 0.0062536134 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
4 Hb_000175_310 0.0066423016 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_067634_010 0.0154999053 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
6 Hb_000312_030 0.0157749743 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
7 Hb_153924_010 0.0227190924 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
8 Hb_056506_090 0.0234705138 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
9 Hb_032683_010 0.0277537047 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_028665_010 0.0288667994 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
11 Hb_093458_030 0.0288752508 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
12 Hb_000208_070 0.0339935758 - - -
13 Hb_005465_050 0.0351558795 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
14 Hb_008145_020 0.0376411855 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
15 Hb_000173_090 0.0381499156 - - -
16 Hb_121689_030 0.0388087852 - - hypothetical protein, partial [Staphylococcus aureus]
17 Hb_108160_010 0.0397096548 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_105251_010 0.0406087419 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_003793_040 0.0420626408 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
20 Hb_001102_280 0.043380682 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_109791_010 Hb_109791_010 Hb_000684_460 Hb_000684_460 Hb_109791_010--Hb_000684_460 Hb_115868_030 Hb_115868_030 Hb_109791_010--Hb_115868_030 Hb_000175_310 Hb_000175_310 Hb_109791_010--Hb_000175_310 Hb_067634_010 Hb_067634_010 Hb_109791_010--Hb_067634_010 Hb_000312_030 Hb_000312_030 Hb_109791_010--Hb_000312_030 Hb_153924_010 Hb_153924_010 Hb_109791_010--Hb_153924_010 Hb_000684_460--Hb_115868_030 Hb_000684_460--Hb_067634_010 Hb_000684_460--Hb_000312_030 Hb_000684_460--Hb_000175_310 Hb_000684_460--Hb_153924_010 Hb_115868_030--Hb_067634_010 Hb_115868_030--Hb_000312_030 Hb_115868_030--Hb_000175_310 Hb_115868_030--Hb_153924_010 Hb_032683_010 Hb_032683_010 Hb_000175_310--Hb_032683_010 Hb_000175_310--Hb_067634_010 Hb_028665_010 Hb_028665_010 Hb_000175_310--Hb_028665_010 Hb_067634_010--Hb_000312_030 Hb_067634_010--Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_067634_010--Hb_056506_090 Hb_000312_030--Hb_153924_010 Hb_000312_030--Hb_056506_090 Hb_153924_010--Hb_056506_090 Hb_005465_050 Hb_005465_050 Hb_153924_010--Hb_005465_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12869 0.266668

CAGE analysis