Hb_001880_020

Information

Type -
Description -
Location Contig1880: 22959-23558
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G091900g
description hypothetical protein
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18551: 23237-23506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001880_020 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_000167_070 0.0555762062 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_005595_030 0.0846260848 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
4 Hb_003927_020 0.089515404 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
5 Hb_001856_280 0.1215430896 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_043792_030 0.1346668961 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
7 Hb_001355_050 0.1361798255 - - -
8 Hb_094002_010 0.1445170437 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_000346_050 0.1466744564 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
10 Hb_150516_010 0.156871761 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
11 Hb_010129_020 0.1576398502 - - cytochrome P450, putative [Ricinus communis]
12 Hb_019654_170 0.1578287603 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
13 Hb_006992_030 0.1592263685 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_004129_180 0.167314175 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
15 Hb_159404_010 0.1685345531 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
16 Hb_014967_010 0.1722875917 - - -
17 Hb_011892_010 0.1731286256 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_188163_010 0.1739612497 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
19 Hb_008055_030 0.1865682222 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_020831_070 0.1877879418 - - hypothetical protein VITISV_027174 [Vitis vinifera]

Gene co-expression network

sample Hb_001880_020 Hb_001880_020 Hb_000167_070 Hb_000167_070 Hb_001880_020--Hb_000167_070 Hb_005595_030 Hb_005595_030 Hb_001880_020--Hb_005595_030 Hb_003927_020 Hb_003927_020 Hb_001880_020--Hb_003927_020 Hb_001856_280 Hb_001856_280 Hb_001880_020--Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_001880_020--Hb_043792_030 Hb_001355_050 Hb_001355_050 Hb_001880_020--Hb_001355_050 Hb_000167_070--Hb_003927_020 Hb_159404_010 Hb_159404_010 Hb_000167_070--Hb_159404_010 Hb_000167_070--Hb_001856_280 Hb_014967_010 Hb_014967_010 Hb_000167_070--Hb_014967_010 Hb_000167_070--Hb_005595_030 Hb_005595_030--Hb_001355_050 Hb_005595_030--Hb_003927_020 Hb_006992_030 Hb_006992_030 Hb_005595_030--Hb_006992_030 Hb_094002_010 Hb_094002_010 Hb_005595_030--Hb_094002_010 Hb_003927_020--Hb_001355_050 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_001856_280--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_001856_280--Hb_019654_170 Hb_001856_280--Hb_000346_050 Hb_005920_030 Hb_005920_030 Hb_001856_280--Hb_005920_030 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_019654_170 Hb_043792_030--Hb_020831_070 Hb_043792_030--Hb_005920_030 Hb_003311_020 Hb_003311_020 Hb_043792_030--Hb_003311_020 Hb_001355_050--Hb_006992_030 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001355_050--Hb_043792_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.036884 0.0352199 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.195266 0.46073

CAGE analysis