Hb_003311_020

Information

Type -
Description -
Location Contig3311: 15917-16409
Sequence    

Annotation

kegg
ID rcu:RCOM_0863040
description hypothetical protein
nr
ID XP_002522896.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SA77
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0863040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003311_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003994_070 0.0842866886 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_000567_270 0.0859016854 - - hypothetical protein L484_017162 [Morus notabilis]
4 Hb_032016_010 0.0911076852 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
5 Hb_009851_090 0.0920416506 - - Protein ABIL2, putative [Ricinus communis]
6 Hb_007533_050 0.1011240916 - - -
7 Hb_000432_020 0.1123142336 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
8 Hb_001250_030 0.1153520892 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005920_030 0.1167303598 - - putative polyprotein [Oryza sativa Japonica Group]
10 Hb_019654_170 0.1193094698 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
11 Hb_003414_040 0.1209696158 - - hypothetical protein VITISV_016691 [Vitis vinifera]
12 Hb_155423_010 0.1222486839 - - -
13 Hb_043792_030 0.122291701 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_006455_020 0.1250122015 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
15 Hb_020831_070 0.1280993169 - - hypothetical protein VITISV_027174 [Vitis vinifera]
16 Hb_093388_010 0.1320141193 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
17 Hb_000346_050 0.1344812016 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_000644_020 0.1400877007 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_001856_280 0.140652322 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_001542_010 0.1464028671 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_003311_020 Hb_003311_020 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_000567_270 Hb_000567_270 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_007533_050 Hb_007533_050 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020 Hb_003994_070--Hb_009851_090 Hb_155423_010 Hb_155423_010 Hb_003994_070--Hb_155423_010 Hb_035651_010 Hb_035651_010 Hb_003994_070--Hb_035651_010 Hb_005920_030 Hb_005920_030 Hb_003994_070--Hb_005920_030 Hb_001250_030 Hb_001250_030 Hb_003994_070--Hb_001250_030 Hb_000567_270--Hb_032016_010 Hb_000567_270--Hb_007533_050 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_000567_270--Hb_009851_090 Hb_006455_020 Hb_006455_020 Hb_000567_270--Hb_006455_020 Hb_032016_010--Hb_007533_050 Hb_032016_010--Hb_009851_090 Hb_003073_030 Hb_003073_030 Hb_032016_010--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_032016_010--Hb_040245_010 Hb_009851_090--Hb_155423_010 Hb_002631_270 Hb_002631_270 Hb_009851_090--Hb_002631_270 Hb_007533_050--Hb_000432_020 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_007533_050--Hb_006455_020 Hb_003414_040 Hb_003414_040 Hb_000432_020--Hb_003414_040 Hb_093388_010 Hb_093388_010 Hb_000432_020--Hb_093388_010 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_000432_020--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.0616 0.784837 1.73721 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.731 21.8798

CAGE analysis