Hb_002631_270

Information

Type transcription factor
Description TF Family: MYB
Location Contig2631: 235799-238429
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09930g
description POPTRDRAFT_760309; hypothetical protein
nr
ID XP_002307190.1
description hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
swissprot
ID P20024
description Myb-related protein Zm1 OS=Zea mays PE=2 SV=1
trembl
ID B9H624
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s09930g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein zm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_270 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
2 Hb_151870_010 0.0769175297 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
3 Hb_155423_010 0.0868232343 - - -
4 Hb_017225_030 0.0963702331 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
5 Hb_009851_090 0.11092406 - - Protein ABIL2, putative [Ricinus communis]
6 Hb_006807_010 0.1192879589 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
7 Hb_029727_010 0.128704821 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000169_100 0.1293717976 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
9 Hb_000567_270 0.132337913 - - hypothetical protein L484_017162 [Morus notabilis]
10 Hb_003994_070 0.1355015224 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_000260_730 0.1379099175 - - -
12 Hb_000644_020 0.1443603758 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_032016_010 0.1446881688 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
14 Hb_003311_020 0.1499850078 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002447_100 0.1568322203 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
16 Hb_005920_030 0.1581241933 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_003073_030 0.1597582303 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008834_010 0.1615450836 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
19 Hb_040245_010 0.1674441189 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
20 Hb_035651_010 0.16947196 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002631_270 Hb_002631_270 Hb_151870_010 Hb_151870_010 Hb_002631_270--Hb_151870_010 Hb_155423_010 Hb_155423_010 Hb_002631_270--Hb_155423_010 Hb_017225_030 Hb_017225_030 Hb_002631_270--Hb_017225_030 Hb_009851_090 Hb_009851_090 Hb_002631_270--Hb_009851_090 Hb_006807_010 Hb_006807_010 Hb_002631_270--Hb_006807_010 Hb_029727_010 Hb_029727_010 Hb_002631_270--Hb_029727_010 Hb_151870_010--Hb_006807_010 Hb_151870_010--Hb_155423_010 Hb_151870_010--Hb_017225_030 Hb_151870_010--Hb_009851_090 Hb_102761_010 Hb_102761_010 Hb_151870_010--Hb_102761_010 Hb_003994_070 Hb_003994_070 Hb_155423_010--Hb_003994_070 Hb_155423_010--Hb_009851_090 Hb_002447_100 Hb_002447_100 Hb_155423_010--Hb_002447_100 Hb_000567_270 Hb_000567_270 Hb_155423_010--Hb_000567_270 Hb_008834_010 Hb_008834_010 Hb_017225_030--Hb_008834_010 Hb_000260_730 Hb_000260_730 Hb_017225_030--Hb_000260_730 Hb_017225_030--Hb_029727_010 Hb_000169_100 Hb_000169_100 Hb_017225_030--Hb_000169_100 Hb_032016_010 Hb_032016_010 Hb_009851_090--Hb_032016_010 Hb_009851_090--Hb_003994_070 Hb_003311_020 Hb_003311_020 Hb_009851_090--Hb_003311_020 Hb_009851_090--Hb_000567_270 Hb_006807_010--Hb_000169_100 Hb_006807_010--Hb_155423_010 Hb_006807_010--Hb_017225_030 Hb_006807_010--Hb_029727_010 Hb_029727_010--Hb_000169_100 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_029727_010--Hb_000260_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246543 0.236944 0.137902 0.556127 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.78406 2.55963

CAGE analysis