Hb_017225_030

Information

Type -
Description -
Location Contig17225: 24449-45486
Sequence    

Annotation

kegg
ID rcu:RCOM_0230710
description oligopeptidase A, putative (EC:3.4.24.70)
nr
ID XP_012079534.1
description PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
swissprot
ID Q94AM1
description Organellar oligopeptidase A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OOP PE=1 SV=1
trembl
ID A0A067KAX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12629 PE=3 SV=1
Gene Ontology
ID GO:0004222
description probable cytosolic oligopeptidase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16249: 24363-45337 , PASA_asmbl_16250: 27831-28472 , PASA_asmbl_16251: 28559-28947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017225_030 0.0 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
2 Hb_002631_270 0.0963702331 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
3 Hb_008834_010 0.111166953 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
4 Hb_000260_730 0.1117126919 - - -
5 Hb_029727_010 0.1135382107 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000169_100 0.1182592787 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
7 Hb_151870_010 0.1187149374 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
8 Hb_001005_040 0.1195392642 - - -
9 Hb_006807_010 0.1272554706 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
10 Hb_155423_010 0.1287537916 - - -
11 Hb_003992_220 0.130773995 - - s-receptor kinase, putative [Ricinus communis]
12 Hb_004312_020 0.1339527538 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000416_010 0.1358859648 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
14 Hb_001109_170 0.1366633752 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
15 Hb_001301_010 0.1406458065 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_035651_010 0.1466838966 - - receptor-kinase, putative [Ricinus communis]
17 Hb_009851_090 0.1478138615 - - Protein ABIL2, putative [Ricinus communis]
18 Hb_000442_170 0.1483637087 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_167211_010 0.1511217473 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
20 Hb_170878_060 0.1517293409 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_017225_030 Hb_017225_030 Hb_002631_270 Hb_002631_270 Hb_017225_030--Hb_002631_270 Hb_008834_010 Hb_008834_010 Hb_017225_030--Hb_008834_010 Hb_000260_730 Hb_000260_730 Hb_017225_030--Hb_000260_730 Hb_029727_010 Hb_029727_010 Hb_017225_030--Hb_029727_010 Hb_000169_100 Hb_000169_100 Hb_017225_030--Hb_000169_100 Hb_151870_010 Hb_151870_010 Hb_017225_030--Hb_151870_010 Hb_002631_270--Hb_151870_010 Hb_155423_010 Hb_155423_010 Hb_002631_270--Hb_155423_010 Hb_009851_090 Hb_009851_090 Hb_002631_270--Hb_009851_090 Hb_006807_010 Hb_006807_010 Hb_002631_270--Hb_006807_010 Hb_002631_270--Hb_029727_010 Hb_000101_320 Hb_000101_320 Hb_008834_010--Hb_000101_320 Hb_004312_020 Hb_004312_020 Hb_008834_010--Hb_004312_020 Hb_000685_140 Hb_000685_140 Hb_008834_010--Hb_000685_140 Hb_008834_010--Hb_000260_730 Hb_001452_090 Hb_001452_090 Hb_008834_010--Hb_001452_090 Hb_000260_730--Hb_029727_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_001005_040 Hb_001005_040 Hb_000260_730--Hb_001005_040 Hb_000260_730--Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_029727_010--Hb_001005_040 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_000169_100--Hb_006807_010 Hb_000169_100--Hb_002631_270 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060 Hb_151870_010--Hb_006807_010 Hb_151870_010--Hb_155423_010 Hb_151870_010--Hb_009851_090 Hb_102761_010 Hb_102761_010 Hb_151870_010--Hb_102761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132149 10.1559 6.93058 15.198 0.0666768 0.0790879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0353829 0.0278424 0.0265383 28.0943 66.1638

CAGE analysis