Hb_007676_060

Information

Type -
Description -
Location Contig7676: 92157-92945
Sequence    

Annotation

kegg
ID pxb:103940701
description cellulose synthase-like protein E2
nr
ID XP_009349137.1
description PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
swissprot
ID Q9SZL9
description Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1
trembl
ID A0A067EZ51
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025630mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57471: 72515-92900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007676_060 0.0 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
2 Hb_001597_090 0.0715935892 - - -
3 Hb_170878_060 0.1206576915 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_146930_010 0.1299517365 - - -
5 Hb_000675_040 0.1339564149 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
6 Hb_000169_100 0.1349683824 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
7 Hb_001288_050 0.136202701 - - -
8 Hb_135554_010 0.1370788186 - - Insulin-degrading enzyme, putative [Ricinus communis]
9 Hb_025668_020 0.1378778281 - - conserved hypothetical protein [Ricinus communis]
10 Hb_145211_010 0.1419183335 - - hypothetical protein M569_05648, partial [Genlisea aurea]
11 Hb_059780_010 0.1420891744 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
12 Hb_000751_070 0.1426131733 - - -
13 Hb_000009_430 0.1427852296 - - conserved hypothetical protein [Ricinus communis]
14 Hb_029727_010 0.1489953212 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_002122_050 0.1541085336 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000751_050 0.1551960463 - - PREDICTED: extensin, partial [Solanum lycopersicum]
17 Hb_009230_020 0.1561926843 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_001571_020 0.1573729136 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
19 Hb_001519_240 0.1600112067 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_000137_060 0.1638673192 - - hypothetical protein JCGZ_15115 [Jatropha curcas]

Gene co-expression network

sample Hb_007676_060 Hb_007676_060 Hb_001597_090 Hb_001597_090 Hb_007676_060--Hb_001597_090 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_146930_010 Hb_146930_010 Hb_007676_060--Hb_146930_010 Hb_000675_040 Hb_000675_040 Hb_007676_060--Hb_000675_040 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_001288_050 Hb_001288_050 Hb_007676_060--Hb_001288_050 Hb_001597_090--Hb_146930_010 Hb_001597_090--Hb_001288_050 Hb_000751_050 Hb_000751_050 Hb_001597_090--Hb_000751_050 Hb_000751_070 Hb_000751_070 Hb_001597_090--Hb_000751_070 Hb_001571_020 Hb_001571_020 Hb_001597_090--Hb_001571_020 Hb_003992_220 Hb_003992_220 Hb_170878_060--Hb_003992_220 Hb_001607_070 Hb_001607_070 Hb_170878_060--Hb_001607_070 Hb_038833_010 Hb_038833_010 Hb_170878_060--Hb_038833_010 Hb_002308_060 Hb_002308_060 Hb_170878_060--Hb_002308_060 Hb_000597_080 Hb_000597_080 Hb_170878_060--Hb_000597_080 Hb_146930_010--Hb_000751_050 Hb_146930_010--Hb_000751_070 Hb_000751_060 Hb_000751_060 Hb_146930_010--Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_146930_010--Hb_000645_250 Hb_145211_010 Hb_145211_010 Hb_000675_040--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000675_040--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000675_040--Hb_121441_010 Hb_131320_010 Hb_131320_010 Hb_000675_040--Hb_131320_010 Hb_002122_050 Hb_002122_050 Hb_000675_040--Hb_002122_050 Hb_029727_010 Hb_029727_010 Hb_000169_100--Hb_029727_010 Hb_017225_030 Hb_017225_030 Hb_000169_100--Hb_017225_030 Hb_006807_010 Hb_006807_010 Hb_000169_100--Hb_006807_010 Hb_002631_270 Hb_002631_270 Hb_000169_100--Hb_002631_270 Hb_151870_010 Hb_151870_010 Hb_000169_100--Hb_151870_010 Hb_000567_150 Hb_000567_150 Hb_001288_050--Hb_000567_150 Hb_001005_040 Hb_001005_040 Hb_001288_050--Hb_001005_040 Hb_001288_050--Hb_000751_070 Hb_001288_050--Hb_001571_020 Hb_002016_130 Hb_002016_130 Hb_001288_050--Hb_002016_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.01344 2.58909 12.6873 0.0684955 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0813905 0 0 41.9216 35.2874

CAGE analysis