Hb_000751_050

Information

Type -
Description -
Location Contig751: 89284-89853
Sequence    

Annotation

kegg
ID sly:101250014
description extensin
nr
ID XP_010320499.1
description PREDICTED: extensin, partial [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID D8RU27
description Putative uncharacterized protein OS=Selaginella moellendorffii GN=SELMODRAFT_414941 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000751_050 0.0 - - PREDICTED: extensin, partial [Solanum lycopersicum]
2 Hb_146930_010 0.0539905375 - - -
3 Hb_001597_090 0.1142451748 - - -
4 Hb_005550_040 0.1198866825 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
5 Hb_078081_020 0.1242047238 - - -
6 Hb_001949_010 0.1243288625 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
7 Hb_178703_010 0.1305871532 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_046770_010 0.136102594 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000751_070 0.1395887397 - - -
10 Hb_105134_010 0.1417601728 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
11 Hb_001597_110 0.1455246509 - - -
12 Hb_006573_250 0.1504660958 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
13 Hb_000751_060 0.1518922003 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
14 Hb_000330_120 0.1527046036 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
15 Hb_007676_060 0.1551960463 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
16 Hb_094439_030 0.1561854009 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
17 Hb_000645_250 0.1563359506 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
18 Hb_003189_020 0.1570539773 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
19 Hb_032223_020 0.1578782133 - - ATP binding protein, putative [Ricinus communis]
20 Hb_011576_010 0.1647329341 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_000751_050 Hb_000751_050 Hb_146930_010 Hb_146930_010 Hb_000751_050--Hb_146930_010 Hb_001597_090 Hb_001597_090 Hb_000751_050--Hb_001597_090 Hb_005550_040 Hb_005550_040 Hb_000751_050--Hb_005550_040 Hb_078081_020 Hb_078081_020 Hb_000751_050--Hb_078081_020 Hb_001949_010 Hb_001949_010 Hb_000751_050--Hb_001949_010 Hb_178703_010 Hb_178703_010 Hb_000751_050--Hb_178703_010 Hb_000751_070 Hb_000751_070 Hb_146930_010--Hb_000751_070 Hb_146930_010--Hb_001597_090 Hb_000751_060 Hb_000751_060 Hb_146930_010--Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_146930_010--Hb_000645_250 Hb_007676_060 Hb_007676_060 Hb_146930_010--Hb_007676_060 Hb_001597_090--Hb_007676_060 Hb_001288_050 Hb_001288_050 Hb_001597_090--Hb_001288_050 Hb_001597_090--Hb_000751_070 Hb_001571_020 Hb_001571_020 Hb_001597_090--Hb_001571_020 Hb_003189_020 Hb_003189_020 Hb_005550_040--Hb_003189_020 Hb_005550_040--Hb_178703_010 Hb_000061_360 Hb_000061_360 Hb_005550_040--Hb_000061_360 Hb_005550_040--Hb_001949_010 Hb_046770_010 Hb_046770_010 Hb_005550_040--Hb_046770_010 Hb_105134_010 Hb_105134_010 Hb_005550_040--Hb_105134_010 Hb_078081_020--Hb_146930_010 Hb_000330_120 Hb_000330_120 Hb_078081_020--Hb_000330_120 Hb_130563_010 Hb_130563_010 Hb_078081_020--Hb_130563_010 Hb_078081_020--Hb_105134_010 Hb_011671_420 Hb_011671_420 Hb_078081_020--Hb_011671_420 Hb_011576_010 Hb_011576_010 Hb_001949_010--Hb_011576_010 Hb_001949_010--Hb_178703_010 Hb_032223_020 Hb_032223_020 Hb_001949_010--Hb_032223_020 Hb_001949_010--Hb_000061_360 Hb_178703_010--Hb_032223_020 Hb_006573_250 Hb_006573_250 Hb_178703_010--Hb_006573_250 Hb_178703_010--Hb_003189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.38765 42.8111 108.331 0.188832 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218177 0 0.148746 494.375 273.029

CAGE analysis