Hb_078081_020

Information

Type -
Description -
Location Contig78081: 2345-2591
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57954: 2256-2884
cDNA
(Sanger)
(ID:Location)		 001_A23.ab1: 2264-2816 , 010_I07.ab1: 2256-2884 , 012_I09.ab1: 2264-2816 , 020_J10.ab1: 2266-2803 , 031_F07.ab1: 2266-2802 , 031_J12.ab1: 2266-2806 , 032_F03.ab1: 2266-2727 , 039_I18.ab1: 2266-2806 , 046_A16.ab1: 2358-2759 , 047_G14.ab1: 2358-2759 , 047_J23.ab1: 2266-2805 , 052_B12.ab1: 2267-2875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078081_020 0.0 - - -
2 Hb_000751_050 0.1242047238 - - PREDICTED: extensin, partial [Solanum lycopersicum]
3 Hb_146930_010 0.1322901173 - - -
4 Hb_000330_120 0.134349336 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
5 Hb_130563_010 0.1519317722 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
6 Hb_105134_010 0.154952807 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
7 Hb_011671_420 0.1568701146 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
8 Hb_046770_010 0.1586623049 - - conserved hypothetical protein [Ricinus communis]
9 Hb_031931_030 0.1592084115 - - lipid binding protein, putative [Ricinus communis]
10 Hb_008226_020 0.1601574659 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
11 Hb_001597_090 0.1661265993 - - -
12 Hb_156499_010 0.1671928858 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
13 Hb_000009_430 0.1672974168 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007676_060 0.1678625641 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
15 Hb_000751_060 0.1733344646 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
16 Hb_000836_480 0.1750321833 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_003398_090 0.179698487 - - PREDICTED: expansin-A4 [Jatropha curcas]
18 Hb_002566_010 0.1806823046 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
19 Hb_001218_070 0.1819599644 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
20 Hb_005550_040 0.1833048094 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_078081_020 Hb_078081_020 Hb_000751_050 Hb_000751_050 Hb_078081_020--Hb_000751_050 Hb_146930_010 Hb_146930_010 Hb_078081_020--Hb_146930_010 Hb_000330_120 Hb_000330_120 Hb_078081_020--Hb_000330_120 Hb_130563_010 Hb_130563_010 Hb_078081_020--Hb_130563_010 Hb_105134_010 Hb_105134_010 Hb_078081_020--Hb_105134_010 Hb_011671_420 Hb_011671_420 Hb_078081_020--Hb_011671_420 Hb_000751_050--Hb_146930_010 Hb_001597_090 Hb_001597_090 Hb_000751_050--Hb_001597_090 Hb_005550_040 Hb_005550_040 Hb_000751_050--Hb_005550_040 Hb_001949_010 Hb_001949_010 Hb_000751_050--Hb_001949_010 Hb_178703_010 Hb_178703_010 Hb_000751_050--Hb_178703_010 Hb_000751_070 Hb_000751_070 Hb_146930_010--Hb_000751_070 Hb_146930_010--Hb_001597_090 Hb_000751_060 Hb_000751_060 Hb_146930_010--Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_146930_010--Hb_000645_250 Hb_007676_060 Hb_007676_060 Hb_146930_010--Hb_007676_060 Hb_000946_030 Hb_000946_030 Hb_000330_120--Hb_000946_030 Hb_002965_130 Hb_002965_130 Hb_000330_120--Hb_002965_130 Hb_094439_030 Hb_094439_030 Hb_000330_120--Hb_094439_030 Hb_026284_010 Hb_026284_010 Hb_000330_120--Hb_026284_010 Hb_000330_120--Hb_000751_050 Hb_036069_020 Hb_036069_020 Hb_130563_010--Hb_036069_020 Hb_004223_180 Hb_004223_180 Hb_130563_010--Hb_004223_180 Hb_031931_030 Hb_031931_030 Hb_130563_010--Hb_031931_030 Hb_001218_070 Hb_001218_070 Hb_130563_010--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_130563_010--Hb_000911_050 Hb_003398_090 Hb_003398_090 Hb_130563_010--Hb_003398_090 Hb_003189_020 Hb_003189_020 Hb_105134_010--Hb_003189_020 Hb_046770_010 Hb_046770_010 Hb_105134_010--Hb_046770_010 Hb_105134_010--Hb_005550_040 Hb_105134_010--Hb_094439_030 Hb_156499_010 Hb_156499_010 Hb_105134_010--Hb_156499_010 Hb_105134_010--Hb_026284_010 Hb_011671_420--Hb_001218_070 Hb_011671_420--Hb_046770_010 Hb_000380_130 Hb_000380_130 Hb_011671_420--Hb_000380_130 Hb_008768_010 Hb_008768_010 Hb_011671_420--Hb_008768_010 Hb_109673_010 Hb_109673_010 Hb_011671_420--Hb_109673_010 Hb_029769_010 Hb_029769_010 Hb_011671_420--Hb_029769_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5383 51.3371 85.4614 632.355 9.78762 2.8464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8881 8.79195 0 2195.22 1019.43

CAGE analysis