Hb_001949_010

Information

Type -
Description -
Location Contig1949: 1452-2024
Sequence    

Annotation

kegg
ID cic:CICLE_v10026439mg
description hypothetical protein
nr
ID XP_012073131.1
description PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
swissprot
ID Q9M8L3
description VQ motif-containing protein 11 OS=Arabidopsis thaliana GN=VQ11 PE=1 SV=1
trembl
ID A0A067KXP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06106 PE=4 SV=1
Gene Ontology
ID GO:0005623
description vq motif-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001949_010 0.0 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
2 Hb_005550_040 0.0956053468 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
3 Hb_011576_010 0.0999506105 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_178703_010 0.1039859908 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_032223_020 0.1224973293 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000751_050 0.1243288625 - - PREDICTED: extensin, partial [Solanum lycopersicum]
7 Hb_000061_360 0.1243350945 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
8 Hb_000230_020 0.1316399071 - - cysteine synthase, putative [Ricinus communis]
9 Hb_006573_250 0.1345118595 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
10 Hb_001597_110 0.1411532733 - - -
11 Hb_146930_010 0.1415411205 - - -
12 Hb_003189_020 0.1480550162 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
13 Hb_004218_310 0.1631181181 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
14 Hb_001004_130 0.1639242539 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
15 Hb_004881_080 0.1692211361 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
16 Hb_000567_300 0.170889574 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_046770_010 0.1718315814 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000751_070 0.1738479238 - - -
19 Hb_026284_010 0.1759981347 - - -
20 Hb_008376_020 0.1768296522 - - hypothetical protein JCGZ_03321 [Jatropha curcas]

Gene co-expression network

sample Hb_001949_010 Hb_001949_010 Hb_005550_040 Hb_005550_040 Hb_001949_010--Hb_005550_040 Hb_011576_010 Hb_011576_010 Hb_001949_010--Hb_011576_010 Hb_178703_010 Hb_178703_010 Hb_001949_010--Hb_178703_010 Hb_032223_020 Hb_032223_020 Hb_001949_010--Hb_032223_020 Hb_000751_050 Hb_000751_050 Hb_001949_010--Hb_000751_050 Hb_000061_360 Hb_000061_360 Hb_001949_010--Hb_000061_360 Hb_003189_020 Hb_003189_020 Hb_005550_040--Hb_003189_020 Hb_005550_040--Hb_178703_010 Hb_005550_040--Hb_000061_360 Hb_046770_010 Hb_046770_010 Hb_005550_040--Hb_046770_010 Hb_105134_010 Hb_105134_010 Hb_005550_040--Hb_105134_010 Hb_000230_020 Hb_000230_020 Hb_011576_010--Hb_000230_020 Hb_003095_110 Hb_003095_110 Hb_011576_010--Hb_003095_110 Hb_000457_130 Hb_000457_130 Hb_011576_010--Hb_000457_130 Hb_000751_070 Hb_000751_070 Hb_011576_010--Hb_000751_070 Hb_001597_110 Hb_001597_110 Hb_011576_010--Hb_001597_110 Hb_178703_010--Hb_032223_020 Hb_006573_250 Hb_006573_250 Hb_178703_010--Hb_006573_250 Hb_178703_010--Hb_003189_020 Hb_178703_010--Hb_000751_050 Hb_032223_020--Hb_006573_250 Hb_008376_020 Hb_008376_020 Hb_032223_020--Hb_008376_020 Hb_000645_250 Hb_000645_250 Hb_032223_020--Hb_000645_250 Hb_032223_020--Hb_005550_040 Hb_146930_010 Hb_146930_010 Hb_000751_050--Hb_146930_010 Hb_001597_090 Hb_001597_090 Hb_000751_050--Hb_001597_090 Hb_000751_050--Hb_005550_040 Hb_078081_020 Hb_078081_020 Hb_000751_050--Hb_078081_020 Hb_000567_300 Hb_000567_300 Hb_000061_360--Hb_000567_300 Hb_004881_080 Hb_004881_080 Hb_000061_360--Hb_004881_080 Hb_000061_360--Hb_003189_020 Hb_002218_040 Hb_002218_040 Hb_000061_360--Hb_002218_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.257686 0.187122 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.3641 0.653265

CAGE analysis