Hb_046770_010

Information

Type -
Description -
Location Contig46770: 77-442
Sequence    

Annotation

kegg
ID rcu:RCOM_0811630
description hypothetical protein
nr
ID XP_002518693.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2N5X0
description Kynurenine formamidase OS=Erythrobacter litoralis (strain HTCC2594) GN=kynB PE=3 SV=1
trembl
ID B9RYA9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0811630 PE=4 SV=1
Gene Ontology
ID GO:0005783
description cyclase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44130: 312-439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046770_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001218_070 0.0888260656 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
3 Hb_109673_010 0.0920473194 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_000380_130 0.09410632 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
5 Hb_003189_020 0.0974204983 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
6 Hb_005550_040 0.1006889169 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
7 Hb_105134_010 0.1008178498 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
8 Hb_011671_420 0.1120293551 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
9 Hb_001597_110 0.1205627816 - - -
10 Hb_094439_030 0.1261486594 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
11 Hb_006573_250 0.129394372 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
12 Hb_074892_010 0.1343192649 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
13 Hb_000751_050 0.136102594 - - PREDICTED: extensin, partial [Solanum lycopersicum]
14 Hb_000061_360 0.139453516 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
15 Hb_033622_020 0.1403067661 - - lipid binding protein, putative [Ricinus communis]
16 Hb_026284_010 0.1436515665 - - -
17 Hb_022815_020 0.1466623992 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
18 Hb_178703_010 0.1492441309 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_001545_270 0.154151494 - - laccase, putative [Ricinus communis]
20 Hb_033843_020 0.1582891782 - - lysosomal alpha-mannosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_046770_010 Hb_046770_010 Hb_001218_070 Hb_001218_070 Hb_046770_010--Hb_001218_070 Hb_109673_010 Hb_109673_010 Hb_046770_010--Hb_109673_010 Hb_000380_130 Hb_000380_130 Hb_046770_010--Hb_000380_130 Hb_003189_020 Hb_003189_020 Hb_046770_010--Hb_003189_020 Hb_005550_040 Hb_005550_040 Hb_046770_010--Hb_005550_040 Hb_105134_010 Hb_105134_010 Hb_046770_010--Hb_105134_010 Hb_001218_070--Hb_109673_010 Hb_001218_070--Hb_000380_130 Hb_001545_270 Hb_001545_270 Hb_001218_070--Hb_001545_270 Hb_011671_420 Hb_011671_420 Hb_001218_070--Hb_011671_420 Hb_033622_020 Hb_033622_020 Hb_001218_070--Hb_033622_020 Hb_109673_010--Hb_001545_270 Hb_033363_080 Hb_033363_080 Hb_109673_010--Hb_033363_080 Hb_004316_130 Hb_004316_130 Hb_109673_010--Hb_004316_130 Hb_032631_080 Hb_032631_080 Hb_109673_010--Hb_032631_080 Hb_074892_010 Hb_074892_010 Hb_000380_130--Hb_074892_010 Hb_000380_130--Hb_033622_020 Hb_001597_110 Hb_001597_110 Hb_000380_130--Hb_001597_110 Hb_000380_130--Hb_011671_420 Hb_003189_020--Hb_005550_040 Hb_003189_020--Hb_105134_010 Hb_178703_010 Hb_178703_010 Hb_003189_020--Hb_178703_010 Hb_000061_360 Hb_000061_360 Hb_003189_020--Hb_000061_360 Hb_004881_080 Hb_004881_080 Hb_003189_020--Hb_004881_080 Hb_005550_040--Hb_178703_010 Hb_005550_040--Hb_000061_360 Hb_001949_010 Hb_001949_010 Hb_005550_040--Hb_001949_010 Hb_005550_040--Hb_105134_010 Hb_094439_030 Hb_094439_030 Hb_105134_010--Hb_094439_030 Hb_156499_010 Hb_156499_010 Hb_105134_010--Hb_156499_010 Hb_026284_010 Hb_026284_010 Hb_105134_010--Hb_026284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.825598 2.29885 5.8102 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 40.5487 10.8076

CAGE analysis