Hb_001545_270

Information

Type -
Description -
Location Contig1545: 316637-320933
Sequence    

Annotation

kegg
ID rcu:RCOM_0298470
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002527130.1
description laccase, putative [Ricinus communis]
swissprot
ID Q6Z8L2
description Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1
trembl
ID B9SMB1
description Laccase OS=Ricinus communis GN=RCOM_0298470 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13382: 316539-320926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_270 0.0 - - laccase, putative [Ricinus communis]
2 Hb_001922_010 0.0623719331 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
3 Hb_109673_010 0.1002640485 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_001218_070 0.1023234318 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
5 Hb_000911_050 0.1069521636 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
6 Hb_000723_240 0.1079094618 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
7 Hb_008418_010 0.109139341 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
8 Hb_006573_250 0.114723587 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
9 Hb_003097_200 0.1147709597 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000797_030 0.1148127608 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
11 Hb_164283_010 0.1159665998 - - hypothetical protein RCOM_0725500 [Ricinus communis]
12 Hb_032631_080 0.1172581348 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
13 Hb_011145_020 0.1245584491 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
14 Hb_003160_050 0.1260111106 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_006637_040 0.1293115139 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
16 Hb_000025_740 0.1318416591 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
17 Hb_010334_040 0.135534553 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
18 Hb_000393_030 0.1368289547 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000834_210 0.1374651523 - - unnamed protein product [Vitis vinifera]
20 Hb_000139_500 0.1382938189 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]

Gene co-expression network

sample Hb_001545_270 Hb_001545_270 Hb_001922_010 Hb_001922_010 Hb_001545_270--Hb_001922_010 Hb_109673_010 Hb_109673_010 Hb_001545_270--Hb_109673_010 Hb_001218_070 Hb_001218_070 Hb_001545_270--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_001545_270--Hb_000911_050 Hb_000723_240 Hb_000723_240 Hb_001545_270--Hb_000723_240 Hb_008418_010 Hb_008418_010 Hb_001545_270--Hb_008418_010 Hb_001922_010--Hb_008418_010 Hb_001922_010--Hb_000723_240 Hb_032631_080 Hb_032631_080 Hb_001922_010--Hb_032631_080 Hb_001691_060 Hb_001691_060 Hb_001922_010--Hb_001691_060 Hb_011145_020 Hb_011145_020 Hb_001922_010--Hb_011145_020 Hb_109673_010--Hb_001218_070 Hb_046770_010 Hb_046770_010 Hb_109673_010--Hb_046770_010 Hb_033363_080 Hb_033363_080 Hb_109673_010--Hb_033363_080 Hb_004316_130 Hb_004316_130 Hb_109673_010--Hb_004316_130 Hb_109673_010--Hb_032631_080 Hb_001218_070--Hb_046770_010 Hb_000380_130 Hb_000380_130 Hb_001218_070--Hb_000380_130 Hb_011671_420 Hb_011671_420 Hb_001218_070--Hb_011671_420 Hb_033622_020 Hb_033622_020 Hb_001218_070--Hb_033622_020 Hb_000797_030 Hb_000797_030 Hb_000911_050--Hb_000797_030 Hb_036069_020 Hb_036069_020 Hb_000911_050--Hb_036069_020 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_001377_010 Hb_001377_010 Hb_000911_050--Hb_001377_010 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040 Hb_003160_050 Hb_003160_050 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_000723_240--Hb_008418_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_008418_010--Hb_018591_010 Hb_008418_010--Hb_006637_040 Hb_003768_100 Hb_003768_100 Hb_008418_010--Hb_003768_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.86193 4.52234 8.2143 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0244831 0.0192635 0 32.4264 5.56483

CAGE analysis