Hb_003160_050

Information

Type -
Description -
Location Contig3160: 35192-36003
Sequence    

Annotation

kegg
ID rcu:RCOM_0926510
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002515584.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RPB5
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0926510 PE=4 SV=1
Gene Ontology
ID GO:0046872
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003160_050 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_000723_240 0.0573999038 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
3 Hb_000834_210 0.0586967823 - - unnamed protein product [Vitis vinifera]
4 Hb_007313_010 0.07838277 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
5 Hb_003768_100 0.0997866225 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
6 Hb_000139_500 0.1070561081 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
7 Hb_002003_010 0.1136674558 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
8 Hb_000318_060 0.1171674846 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008418_010 0.1219516711 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
10 Hb_000609_020 0.1244105205 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
11 Hb_001922_010 0.1255920527 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
12 Hb_001545_270 0.1260111106 - - laccase, putative [Ricinus communis]
13 Hb_004010_090 0.1283796999 - - ATP binding protein, putative [Ricinus communis]
14 Hb_011861_020 0.1300115943 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
15 Hb_028927_010 0.1305412235 - - leucine-rich repeat protein, putative [Ricinus communis]
16 Hb_000393_030 0.1319061866 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_007017_120 0.1338592004 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
18 Hb_000017_320 0.135426242 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
19 Hb_000057_180 0.1358339075 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
20 Hb_002475_030 0.1375386868 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003160_050 Hb_003160_050 Hb_000723_240 Hb_000723_240 Hb_003160_050--Hb_000723_240 Hb_000834_210 Hb_000834_210 Hb_003160_050--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_003160_050--Hb_007313_010 Hb_003768_100 Hb_003768_100 Hb_003160_050--Hb_003768_100 Hb_000139_500 Hb_000139_500 Hb_003160_050--Hb_000139_500 Hb_002003_010 Hb_002003_010 Hb_003160_050--Hb_002003_010 Hb_000723_240--Hb_000834_210 Hb_000723_240--Hb_007313_010 Hb_008418_010 Hb_008418_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_000834_210--Hb_007313_010 Hb_000834_210--Hb_002003_010 Hb_011861_020 Hb_011861_020 Hb_000834_210--Hb_011861_020 Hb_000057_180 Hb_000057_180 Hb_000834_210--Hb_000057_180 Hb_007313_010--Hb_003768_100 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_003734_120 Hb_003734_120 Hb_007313_010--Hb_003734_120 Hb_003768_100--Hb_008418_010 Hb_003768_100--Hb_000723_240 Hb_003226_050 Hb_003226_050 Hb_003768_100--Hb_003226_050 Hb_007017_120 Hb_007017_120 Hb_003768_100--Hb_007017_120 Hb_000318_060 Hb_000318_060 Hb_000139_500--Hb_000318_060 Hb_000393_030 Hb_000393_030 Hb_000139_500--Hb_000393_030 Hb_003913_060 Hb_003913_060 Hb_000139_500--Hb_003913_060 Hb_003398_090 Hb_003398_090 Hb_000139_500--Hb_003398_090 Hb_008066_060 Hb_008066_060 Hb_000139_500--Hb_008066_060 Hb_000017_320 Hb_000017_320 Hb_002003_010--Hb_000017_320 Hb_001349_020 Hb_001349_020 Hb_002003_010--Hb_001349_020 Hb_005730_070 Hb_005730_070 Hb_002003_010--Hb_005730_070 Hb_001114_120 Hb_001114_120 Hb_002003_010--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.126861 0.382198 0.557847 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.2878 0.224481

CAGE analysis