Hb_000318_060

Information

Type -
Description -
Location Contig318: 59455-59835
Sequence    

Annotation

kegg
ID rcu:RCOM_0774210
description hypothetical protein
nr
ID XP_002521845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S776
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774210 PE=4 SV=1
Gene Ontology
ID GO:0000166
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000139_500 0.0539087616 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
3 Hb_003913_060 0.083426586 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000393_030 0.0978061504 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_002333_010 0.0996680484 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
6 Hb_001568_010 0.1017155268 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008727_030 0.1143430051 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003160_050 0.1171674846 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_003768_100 0.1223227513 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
10 Hb_007313_010 0.1252362273 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
11 Hb_000163_010 0.1259520276 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
12 Hb_118707_020 0.1259833801 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003398_090 0.1352588006 - - PREDICTED: expansin-A4 [Jatropha curcas]
14 Hb_150084_010 0.1365628065 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
15 Hb_001053_110 0.1387568356 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
16 Hb_000834_210 0.1388130439 - - unnamed protein product [Vitis vinifera]
17 Hb_000967_010 0.1407737448 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
18 Hb_001514_070 0.14140516 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_005333_120 0.1427533569 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
20 Hb_008727_040 0.1433252909 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000318_060 Hb_000318_060 Hb_000139_500 Hb_000139_500 Hb_000318_060--Hb_000139_500 Hb_003913_060 Hb_003913_060 Hb_000318_060--Hb_003913_060 Hb_000393_030 Hb_000393_030 Hb_000318_060--Hb_000393_030 Hb_002333_010 Hb_002333_010 Hb_000318_060--Hb_002333_010 Hb_001568_010 Hb_001568_010 Hb_000318_060--Hb_001568_010 Hb_008727_030 Hb_008727_030 Hb_000318_060--Hb_008727_030 Hb_000139_500--Hb_000393_030 Hb_000139_500--Hb_003913_060 Hb_003160_050 Hb_003160_050 Hb_000139_500--Hb_003160_050 Hb_003398_090 Hb_003398_090 Hb_000139_500--Hb_003398_090 Hb_008066_060 Hb_008066_060 Hb_000139_500--Hb_008066_060 Hb_000163_010 Hb_000163_010 Hb_003913_060--Hb_000163_010 Hb_003913_060--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_003913_060--Hb_015978_010 Hb_011849_020 Hb_011849_020 Hb_003913_060--Hb_011849_020 Hb_001514_070 Hb_001514_070 Hb_000393_030--Hb_001514_070 Hb_000393_030--Hb_002333_010 Hb_002870_010 Hb_002870_010 Hb_000393_030--Hb_002870_010 Hb_000393_030--Hb_003398_090 Hb_150084_010 Hb_150084_010 Hb_002333_010--Hb_150084_010 Hb_000963_010 Hb_000963_010 Hb_002333_010--Hb_000963_010 Hb_012787_050 Hb_012787_050 Hb_002333_010--Hb_012787_050 Hb_002333_010--Hb_001568_010 Hb_005333_120 Hb_005333_120 Hb_002333_010--Hb_005333_120 Hb_006846_030 Hb_006846_030 Hb_001568_010--Hb_006846_030 Hb_003847_050 Hb_003847_050 Hb_001568_010--Hb_003847_050 Hb_004282_010 Hb_004282_010 Hb_001568_010--Hb_004282_010 Hb_008727_040 Hb_008727_040 Hb_001568_010--Hb_008727_040 Hb_001568_010--Hb_012787_050 Hb_000014_080 Hb_000014_080 Hb_001568_010--Hb_000014_080 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_008727_030--Hb_118707_020 Hb_003435_070 Hb_003435_070 Hb_008727_030--Hb_003435_070 Hb_003789_020 Hb_003789_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.477246 0.758772 2.9295 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.47345 0.892417

CAGE analysis