Hb_011139_010

Information

Type -
Description -
Location Contig11139: 18636-20273
Sequence    

Annotation

kegg
ID rcu:RCOM_1410040
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_002523618.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q8H9B6
description Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT PE=2 SV=1
trembl
ID B9SC99
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1410040 PE=4 SV=1
Gene Ontology
ID GO:0042409
description caffeoyl- o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03463: 18606-19937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011139_010 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_003789_020 0.0852609504 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
3 Hb_182831_020 0.0911871036 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_008727_030 0.1119327418 - - conserved hypothetical protein [Ricinus communis]
5 Hb_030394_050 0.1351146846 - - lipid binding protein, putative [Ricinus communis]
6 Hb_000676_380 0.1393228382 - - cytochrome P450 family protein [Populus trichocarpa]
7 Hb_161346_010 0.1398903425 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
8 Hb_001775_130 0.1431325818 - - Prephenate dehydratase [Hevea brasiliensis]
9 Hb_011452_020 0.1432009655 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
10 Hb_001360_060 0.1432089602 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
11 Hb_005144_180 0.1477338727 - - PREDICTED: protein enabled homolog [Populus euphratica]
12 Hb_003435_070 0.1479051261 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
13 Hb_003171_070 0.1487608102 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
14 Hb_039096_010 0.1500596601 - - unknown [Populus trichocarpa]
15 Hb_001148_050 0.1533989443 - - -
16 Hb_000077_450 0.1576772102 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_003090_230 0.1604832721 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002876_190 0.1608221485 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
19 Hb_081282_010 0.164386654 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
20 Hb_003177_080 0.1648890126 - - hypothetical protein L484_016032 [Morus notabilis]

Gene co-expression network

sample Hb_011139_010 Hb_011139_010 Hb_003789_020 Hb_003789_020 Hb_011139_010--Hb_003789_020 Hb_182831_020 Hb_182831_020 Hb_011139_010--Hb_182831_020 Hb_008727_030 Hb_008727_030 Hb_011139_010--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_011139_010--Hb_030394_050 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010 Hb_003789_020--Hb_008727_030 Hb_003789_020--Hb_030394_050 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_005144_180 Hb_005144_180 Hb_003789_020--Hb_005144_180 Hb_182831_020--Hb_161346_010 Hb_003171_070 Hb_003171_070 Hb_182831_020--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_182831_020--Hb_131029_010 Hb_182831_020--Hb_000676_380 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_008727_030--Hb_118707_020 Hb_003435_070 Hb_003435_070 Hb_008727_030--Hb_003435_070 Hb_008727_030--Hb_005144_180 Hb_030394_050--Hb_182831_020 Hb_030394_050--Hb_001360_060 Hb_030394_050--Hb_161346_010 Hb_030394_050--Hb_005144_180 Hb_003090_230 Hb_003090_230 Hb_000676_380--Hb_003090_230 Hb_020805_110 Hb_020805_110 Hb_000676_380--Hb_020805_110 Hb_000676_380--Hb_003171_070 Hb_001856_150 Hb_001856_150 Hb_000676_380--Hb_001856_150 Hb_004875_040 Hb_004875_040 Hb_000676_380--Hb_004875_040 Hb_009711_040 Hb_009711_040 Hb_000676_380--Hb_009711_040 Hb_161346_010--Hb_003171_070 Hb_161346_010--Hb_131029_010 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_161346_010--Hb_003789_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0932892 2.62294 3.00794 84.9059 0.017826 0.0156258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0319452 0.0594241 98.0769 9.25528

CAGE analysis