Hb_002413_030

Information

Type -
Description -
Location Contig2413: 33602-38163
Sequence    

Annotation

kegg
ID rcu:RCOM_0926970
description sulfate transporter, putative
nr
ID XP_002515590.1
description sulfate transporter, putative [Ricinus communis]
swissprot
ID Q94LW6
description Probable sulfate transporter 3.5 OS=Arabidopsis thaliana GN=SULTR3;5 PE=2 SV=1
trembl
ID B9RPC1
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_0926970 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sulfate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25304: 33597-35905 , PASA_asmbl_25305: 34400-34904 , PASA_asmbl_25306: 35924-37989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002413_030 0.0 - - sulfate transporter, putative [Ricinus communis]
2 Hb_007007_020 0.0593373806 - - conserved hypothetical protein [Ricinus communis]
3 Hb_082733_010 0.0835822647 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
4 Hb_000046_250 0.1124223082 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023714_010 0.1128963187 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
6 Hb_041063_010 0.1186923374 - - Disease resistance protein RFL1, putative [Ricinus communis]
7 Hb_003057_040 0.1254747847 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
8 Hb_081191_010 0.1256611121 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
9 Hb_161346_010 0.128595476 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
10 Hb_131029_010 0.1315417285 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_006326_020 0.1337827494 - - -
12 Hb_060236_010 0.1399639521 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
13 Hb_131417_010 0.1412629315 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
14 Hb_000098_210 0.1494735634 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
15 Hb_000032_330 0.1519784918 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006275_040 0.1577531429 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
17 Hb_003811_050 0.1588005825 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
18 Hb_000329_570 0.16017735 - - -
19 Hb_182831_020 0.1621438675 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_001091_010 0.1626844479 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]

Gene co-expression network

sample Hb_002413_030 Hb_002413_030 Hb_007007_020 Hb_007007_020 Hb_002413_030--Hb_007007_020 Hb_082733_010 Hb_082733_010 Hb_002413_030--Hb_082733_010 Hb_000046_250 Hb_000046_250 Hb_002413_030--Hb_000046_250 Hb_023714_010 Hb_023714_010 Hb_002413_030--Hb_023714_010 Hb_041063_010 Hb_041063_010 Hb_002413_030--Hb_041063_010 Hb_003057_040 Hb_003057_040 Hb_002413_030--Hb_003057_040 Hb_007007_020--Hb_082733_010 Hb_060236_010 Hb_060236_010 Hb_007007_020--Hb_060236_010 Hb_006326_020 Hb_006326_020 Hb_007007_020--Hb_006326_020 Hb_007007_020--Hb_003057_040 Hb_001091_010 Hb_001091_010 Hb_007007_020--Hb_001091_010 Hb_082733_010--Hb_060236_010 Hb_059226_020 Hb_059226_020 Hb_082733_010--Hb_059226_020 Hb_082733_010--Hb_041063_010 Hb_082733_010--Hb_001091_010 Hb_000046_250--Hb_007007_020 Hb_161346_010 Hb_161346_010 Hb_000046_250--Hb_161346_010 Hb_000046_250--Hb_023714_010 Hb_000046_250--Hb_082733_010 Hb_182831_020 Hb_182831_020 Hb_000046_250--Hb_182831_020 Hb_023714_010--Hb_003057_040 Hb_006275_040 Hb_006275_040 Hb_023714_010--Hb_006275_040 Hb_000329_570 Hb_000329_570 Hb_023714_010--Hb_000329_570 Hb_001300_060 Hb_001300_060 Hb_023714_010--Hb_001300_060 Hb_023714_010--Hb_007007_020 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_041063_010--Hb_060236_010 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_004241_050 Hb_004241_050 Hb_041063_010--Hb_004241_050 Hb_002054_090 Hb_002054_090 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010 Hb_003057_040--Hb_006275_040 Hb_003057_040--Hb_001300_060 Hb_005144_140 Hb_005144_140 Hb_003057_040--Hb_005144_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0739218 0.106462 1.93959 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.933584 0

CAGE analysis