Hb_000046_250

Information

Type -
Description -
Location Contig46: 213645-214748
Sequence    

Annotation

kegg
ID rcu:RCOM_0679640
description hypothetical protein
nr
ID XP_002516859.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSZ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002413_030 0.1124223082 - - sulfate transporter, putative [Ricinus communis]
3 Hb_007007_020 0.1213659845 - - conserved hypothetical protein [Ricinus communis]
4 Hb_161346_010 0.1366098033 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
5 Hb_023714_010 0.1369789248 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
6 Hb_082733_010 0.1388178624 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
7 Hb_182831_020 0.1457355852 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_131029_010 0.1476000873 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
9 Hb_003057_040 0.1488746081 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
10 Hb_006326_020 0.1569793026 - - -
11 Hb_001091_010 0.1650273923 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
12 Hb_150263_030 0.1654368285 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000108_010 0.1655656241 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
14 Hb_004375_040 0.1655658383 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
15 Hb_003589_040 0.1656120466 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
16 Hb_060231_020 0.1659520199 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
17 Hb_000967_070 0.1660997896 - - rubber peroxidase 1 [Hevea brasiliensis]
18 Hb_025519_010 0.1661239282 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
19 Hb_034661_050 0.1668266058 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
20 Hb_081191_010 0.1671919316 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000046_250 Hb_000046_250 Hb_002413_030 Hb_002413_030 Hb_000046_250--Hb_002413_030 Hb_007007_020 Hb_007007_020 Hb_000046_250--Hb_007007_020 Hb_161346_010 Hb_161346_010 Hb_000046_250--Hb_161346_010 Hb_023714_010 Hb_023714_010 Hb_000046_250--Hb_023714_010 Hb_082733_010 Hb_082733_010 Hb_000046_250--Hb_082733_010 Hb_182831_020 Hb_182831_020 Hb_000046_250--Hb_182831_020 Hb_002413_030--Hb_007007_020 Hb_002413_030--Hb_082733_010 Hb_002413_030--Hb_023714_010 Hb_041063_010 Hb_041063_010 Hb_002413_030--Hb_041063_010 Hb_003057_040 Hb_003057_040 Hb_002413_030--Hb_003057_040 Hb_007007_020--Hb_082733_010 Hb_060236_010 Hb_060236_010 Hb_007007_020--Hb_060236_010 Hb_006326_020 Hb_006326_020 Hb_007007_020--Hb_006326_020 Hb_007007_020--Hb_003057_040 Hb_001091_010 Hb_001091_010 Hb_007007_020--Hb_001091_010 Hb_161346_010--Hb_182831_020 Hb_003171_070 Hb_003171_070 Hb_161346_010--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_161346_010--Hb_131029_010 Hb_000676_380 Hb_000676_380 Hb_161346_010--Hb_000676_380 Hb_161346_010--Hb_002413_030 Hb_003789_020 Hb_003789_020 Hb_161346_010--Hb_003789_020 Hb_023714_010--Hb_003057_040 Hb_006275_040 Hb_006275_040 Hb_023714_010--Hb_006275_040 Hb_000329_570 Hb_000329_570 Hb_023714_010--Hb_000329_570 Hb_001300_060 Hb_001300_060 Hb_023714_010--Hb_001300_060 Hb_023714_010--Hb_007007_020 Hb_082733_010--Hb_060236_010 Hb_059226_020 Hb_059226_020 Hb_082733_010--Hb_059226_020 Hb_082733_010--Hb_041063_010 Hb_082733_010--Hb_001091_010 Hb_011139_010 Hb_011139_010 Hb_182831_020--Hb_011139_010 Hb_182831_020--Hb_003789_020 Hb_182831_020--Hb_003171_070 Hb_182831_020--Hb_131029_010 Hb_182831_020--Hb_000676_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.36136 0.479147 0.945417 26.1622 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.219586 13.4663 0.241645

CAGE analysis