Hb_001091_010

Information

Type -
Description -
Location Contig1091: 4874-11287
Sequence    

Annotation

kegg
ID mdm:103441087
description putative disease resistance protein RGA4
nr
ID XP_008367670.1
description PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0D9ZP31
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0000166
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02778: 4694-4807 , PASA_asmbl_02779: 7070-7299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001091_010 0.0 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
2 Hb_007007_020 0.1148064158 - - conserved hypothetical protein [Ricinus communis]
3 Hb_082733_010 0.1234813667 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
4 Hb_000421_150 0.1245160084 - - Zinc finger protein GIS2 [Medicago truncatula]
5 Hb_007101_240 0.1245255113 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010681_020 0.1245424464 - - JHL22C18.10 [Jatropha curcas]
7 Hb_000483_290 0.1245474607 - - PREDICTED: ankyrin-1-like [Prunus mume]
8 Hb_000045_100 0.1251365212 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000345_520 0.125438462 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
10 Hb_023280_020 0.1256089782 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
11 Hb_033273_010 0.1260342618 - - -
12 Hb_000819_050 0.1260387084 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
13 Hb_142461_010 0.128797737 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_001950_050 0.1288365498 - - -
15 Hb_014096_010 0.1302453934 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_000552_040 0.1307015219 - - -
17 Hb_175976_020 0.130979508 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
18 Hb_003057_040 0.1322941268 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
19 Hb_001424_050 0.1329297092 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
20 Hb_005656_020 0.1334502208 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]

Gene co-expression network

sample Hb_001091_010 Hb_001091_010 Hb_007007_020 Hb_007007_020 Hb_001091_010--Hb_007007_020 Hb_082733_010 Hb_082733_010 Hb_001091_010--Hb_082733_010 Hb_000421_150 Hb_000421_150 Hb_001091_010--Hb_000421_150 Hb_007101_240 Hb_007101_240 Hb_001091_010--Hb_007101_240 Hb_010681_020 Hb_010681_020 Hb_001091_010--Hb_010681_020 Hb_000483_290 Hb_000483_290 Hb_001091_010--Hb_000483_290 Hb_002413_030 Hb_002413_030 Hb_007007_020--Hb_002413_030 Hb_007007_020--Hb_082733_010 Hb_060236_010 Hb_060236_010 Hb_007007_020--Hb_060236_010 Hb_006326_020 Hb_006326_020 Hb_007007_020--Hb_006326_020 Hb_003057_040 Hb_003057_040 Hb_007007_020--Hb_003057_040 Hb_082733_010--Hb_002413_030 Hb_082733_010--Hb_060236_010 Hb_059226_020 Hb_059226_020 Hb_082733_010--Hb_059226_020 Hb_041063_010 Hb_041063_010 Hb_082733_010--Hb_041063_010 Hb_000421_150--Hb_007101_240 Hb_000421_150--Hb_010681_020 Hb_000421_150--Hb_000483_290 Hb_000045_100 Hb_000045_100 Hb_000421_150--Hb_000045_100 Hb_000345_520 Hb_000345_520 Hb_000421_150--Hb_000345_520 Hb_023280_020 Hb_023280_020 Hb_000421_150--Hb_023280_020 Hb_007101_240--Hb_010681_020 Hb_007101_240--Hb_000483_290 Hb_007101_240--Hb_000345_520 Hb_007101_240--Hb_000045_100 Hb_007101_240--Hb_023280_020 Hb_010681_020--Hb_000483_290 Hb_010681_020--Hb_000345_520 Hb_010681_020--Hb_023280_020 Hb_010681_020--Hb_000045_100 Hb_000483_290--Hb_000345_520 Hb_000483_290--Hb_023280_020 Hb_000483_290--Hb_000045_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0723118 0.107417 6.43887 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.55211 0.0730554

CAGE analysis