Hb_007101_240

Information

Type -
Description -
Location Contig7101: 134017-134460
Sequence    

Annotation

kegg
ID rcu:RCOM_0699920
description hypothetical protein
nr
ID XP_002520217.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2J8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010681_020 0.0010127562 - - JHL22C18.10 [Jatropha curcas]
3 Hb_000421_150 0.0011789342 - - Zinc finger protein GIS2 [Medicago truncatula]
4 Hb_000483_290 0.0012444856 - - PREDICTED: ankyrin-1-like [Prunus mume]
5 Hb_000345_520 0.0137024824 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
6 Hb_000045_100 0.0141598868 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023280_020 0.0150624633 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
8 Hb_000819_050 0.0180841877 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
9 Hb_033273_010 0.021268786 - - -
10 Hb_142461_010 0.0315927299 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_001950_050 0.0349503122 - - -
12 Hb_175976_020 0.0393596551 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
13 Hb_000552_040 0.041646089 - - -
14 Hb_001424_050 0.0453122305 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_005656_020 0.0467909079 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
16 Hb_002281_030 0.0558304342 - - -
17 Hb_002792_040 0.0602206442 - - -
18 Hb_034507_020 0.0622076176 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_017226_020 0.0633403339 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
20 Hb_007455_010 0.0751448926 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]

Gene co-expression network

sample Hb_007101_240 Hb_007101_240 Hb_010681_020 Hb_010681_020 Hb_007101_240--Hb_010681_020 Hb_000421_150 Hb_000421_150 Hb_007101_240--Hb_000421_150 Hb_000483_290 Hb_000483_290 Hb_007101_240--Hb_000483_290 Hb_000345_520 Hb_000345_520 Hb_007101_240--Hb_000345_520 Hb_000045_100 Hb_000045_100 Hb_007101_240--Hb_000045_100 Hb_023280_020 Hb_023280_020 Hb_007101_240--Hb_023280_020 Hb_010681_020--Hb_000483_290 Hb_010681_020--Hb_000421_150 Hb_010681_020--Hb_000345_520 Hb_010681_020--Hb_023280_020 Hb_010681_020--Hb_000045_100 Hb_000421_150--Hb_000483_290 Hb_000421_150--Hb_000045_100 Hb_000421_150--Hb_000345_520 Hb_000421_150--Hb_023280_020 Hb_000483_290--Hb_000345_520 Hb_000483_290--Hb_023280_020 Hb_000483_290--Hb_000045_100 Hb_000345_520--Hb_023280_020 Hb_000819_050 Hb_000819_050 Hb_000345_520--Hb_000819_050 Hb_033273_010 Hb_033273_010 Hb_000045_100--Hb_033273_010 Hb_001950_050 Hb_001950_050 Hb_000045_100--Hb_001950_050 Hb_023280_020--Hb_000819_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.25728 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.792723 0

CAGE analysis